Difference between revisions of "TSS:Hg 100331.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=32 |entrez_id=54586 |gc_percent=0.422886 |gene_alias=AFAF|C9orf11|SPACA8 |gene_description=equatorin |gene_name=EQTN |gene_type...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |C9orf11= | ||
| + | |SPACA8= | ||
| + | |all_trans=BC137351:0 BC137352:0 BC144602:0 ENST00000537675.5:-20 ENST00000380031.2:-20 uc011lnq.3:-20 uc003zqm.4:-20 BC014307:-20 ENST00000380032.7:-23 NM_001161585:-23 NM_020641:-23 uc003zql.4:-23 AJ278482:-23 KJ902669:43 ENST00000484994.1:358 uc064smi.1:358 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| + | |distance=0 | ||
|distance_to_tss=32 | |distance_to_tss=32 | ||
| + | |end=27297116 | ||
|entrez_id=54586 | |entrez_id=54586 | ||
|gc_percent=0.422886 | |gc_percent=0.422886 | ||
|gene_alias=AFAF|C9orf11|SPACA8 | |gene_alias=AFAF|C9orf11|SPACA8 | ||
|gene_description=equatorin | |gene_description=equatorin | ||
| − | |gene_name=EQTN | + | |gene_id=54586 |
| + | |gene_name=equatorin | ||
| + | |gene_source=HGNC:1359 | ||
| + | |gene_symbol=EQTN | ||
| + | |gene_synonyms=AFAF SPACA8 equatorin | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:1359 | ||
|nearest_ensembl=ENSG00000120160 | |nearest_ensembl=ENSG00000120160 | ||
|nearest_promoter_id=NM_001161585 | |nearest_promoter_id=NM_001161585 | ||
|nearest_refseq=NM_020641 | |nearest_refseq=NM_020641 | ||
|nearest_unigene=Hs.163070 | |nearest_unigene=Hs.163070 | ||
| + | |num_trans=16 | ||
| + | |species=human | ||
| + | |start=27297097 | ||
| + | |strand=- | ||
| + | |transcript_name=BC137351 BC137352 BC144602 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100331.1 | |tss_id=hg_100331.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 17:06, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BC137351 BC137352 BC144602 |
|---|---|
| Distance: | 0 |
| Num_trans: | 16 |
| All_trans: | BC137351:0 BC137352:0 BC144602:0 ENST00000537675.5:-20 ENST00000380031.2:-20 uc011lnq.3:-20 uc003zqm.4:-20 BC014307:-20 ENST00000380032.7:-23 NM_001161585:-23 NM_020641:-23 uc003zql.4:-23 AJ278482:-23 KJ902669:43 ENST00000484994.1:358 uc064smi.1:358 |
TATA-Box annotation
| Distance to TSS: | 32 |
|---|---|
| Nearest PromoterID: | NM_001161585 |
| Entrez ID: | 54586 |
| Nearest Unigene: | Hs.163070 |
| Nearest Refseq: | NM_020641 |
| Nearest Ensembl: | ENSG00000120160 |
| Gene Name: | equatorin |
| Gene Alias: | AFAF |
| Gene Description: | equatorin |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.422886 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
