Difference between revisions of "TSS:Hg 100332.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=4 |entrez_id=54586 |gc_percent=0.442786 |gene_alias=AFAF|C9orf11|SPACA8 |gene_description=equatorin |gene_name=EQTN |gene_type=...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |C9orf11= | ||
| + | |SPACA8= | ||
| + | |all_trans=ENST00000380032.7:0 ENST00000537675.5:0 ENST00000380031.2:0 NM_001161585:0 NM_020641:0 uc003zql.4:0 uc011lnq.3:0 uc003zqm.4:0 AJ278482:0 BC014307:0 BC137351:20 BC137352:20 BC144602:20 KJ902669:74 ENST00000484994.1:389 uc064smi.1:389 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| + | |distance=0 | ||
|distance_to_tss=4 | |distance_to_tss=4 | ||
| + | |end=27297142 | ||
|entrez_id=54586 | |entrez_id=54586 | ||
|gc_percent=0.442786 | |gc_percent=0.442786 | ||
|gene_alias=AFAF|C9orf11|SPACA8 | |gene_alias=AFAF|C9orf11|SPACA8 | ||
|gene_description=equatorin | |gene_description=equatorin | ||
| − | |gene_name=EQTN | + | |gene_id=54586 |
| + | |gene_name=equatorin | ||
| + | |gene_source=HGNC:1359 | ||
| + | |gene_symbol=EQTN | ||
| + | |gene_synonyms=AFAF SPACA8 equatorin | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:1359 | ||
|nearest_ensembl=ENSG00000120160 | |nearest_ensembl=ENSG00000120160 | ||
|nearest_promoter_id=NM_001161585 | |nearest_promoter_id=NM_001161585 | ||
|nearest_refseq=NM_020641 | |nearest_refseq=NM_020641 | ||
|nearest_unigene=Hs.163070 | |nearest_unigene=Hs.163070 | ||
| + | |num_trans=16 | ||
| + | |species=human | ||
| + | |start=27297128 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000380032.7 ENST00000537675.5 ENST00000380031.2 NM_001161585 NM_020641 uc003zql.4 uc011lnq.3 uc003zqm.4 AJ278482 BC014307 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100332.1 | |tss_id=hg_100332.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q9NQ60 | ||
}} | }} | ||
Revision as of 17:06, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000380032.7 ENST00000537675.5 ENST00000380031.2 NM_001161585 NM_020641 uc003zql.4 uc011lnq.3 uc003zqm.4 AJ278482 BC014307 |
|---|---|
| Distance: | 0 |
| Num_trans: | 16 |
| All_trans: | ENST00000380032.7:0 ENST00000537675.5:0 ENST00000380031.2:0 NM_001161585:0 NM_020641:0 uc003zql.4:0 uc011lnq.3:0 uc003zqm.4:0 AJ278482:0 BC014307:0 BC137351:20 BC137352:20 BC144602:20 KJ902669:74 ENST00000484994.1:389 uc064smi.1:389 |
TATA-Box annotation
| Distance to TSS: | 4 |
|---|---|
| Nearest PromoterID: | NM_001161585 |
| Entrez ID: | 54586 |
| Nearest Unigene: | Hs.163070 |
| Nearest Refseq: | NM_020641 |
| Nearest Ensembl: | ENSG00000120160 |
| Gene Name: | equatorin |
| Gene Alias: | AFAF |
| Gene Description: | equatorin |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.442786 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
