Difference between revisions of "TSS:Hg 105362.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.08 |distance_to_tss=32 |entrez_id=1305 |gc_percent=0.666667 |gene_alias=CMS19|COLXIIIA1 |gene_description=collagen type XIII alpha 1 chain |gene_nam...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |COLXIIIA1= | ||
| + | |all_trans=ENST00000479733.5:0 ENST00000398978.7:0 ENST00000354547.7:0 ENST00000357811.7:0 uc057tui.1:0 uc057tuj.1:0 uc057tuk.1:0 uc057tul.1:0 BC139913:0 AJ293624:0 NM_080805:-6 NM_080800:-6 NM_080802:-6 NM_080801:-6 NM_001130103:-6 NM_080798:-6 ENST00000520267.5:171 ENST00000398969.7:171 uc057tum.1:171 uc057tun.1:171 BC136385:171 ENST00000517713.5:477 ENST00000522165.5:477 ENST00000520133.5:477 uc057tuo.1:477 uc057tup.1:477 uc057tuq.1:477 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| + | |distance=0 | ||
|distance_to_tss=32 | |distance_to_tss=32 | ||
| + | |end=69801947 | ||
|entrez_id=1305 | |entrez_id=1305 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
|gene_alias=CMS19|COLXIIIA1 | |gene_alias=CMS19|COLXIIIA1 | ||
|gene_description=collagen type XIII alpha 1 chain | |gene_description=collagen type XIII alpha 1 chain | ||
| − | |gene_name=COL13A1 | + | |gene_id=1305 |
| + | |gene_name=collagen type XIII alpha 1 | ||
| + | |gene_source=HGNC:2190 | ||
| + | |gene_symbol=COL13A1 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:2190 | ||
|nearest_ensembl=ENSG00000197467 | |nearest_ensembl=ENSG00000197467 | ||
|nearest_promoter_id=NM_080805 | |nearest_promoter_id=NM_080805 | ||
|nearest_refseq=NM_005203 | |nearest_refseq=NM_005203 | ||
|nearest_unigene=Hs.695934 | |nearest_unigene=Hs.695934 | ||
| + | |num_trans=27 | ||
| + | |species=human | ||
| + | |start=69801893 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000479733.5 ENST00000398978.7 ENST00000354547.7 ENST00000357811.7 uc057tui.1 uc057tuj.1 uc057tuk.1 uc057tul.1 BC139913 AJ293624 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105362.1 | |tss_id=hg_105362.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=E7EX21 Q5TAT6 | ||
}} | }} | ||
Revision as of 21:32, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000479733.5 ENST00000398978.7 ENST00000354547.7 ENST00000357811.7 uc057tui.1 uc057tuj.1 uc057tuk.1 uc057tul.1 BC139913 AJ293624 |
|---|---|
| Distance: | 0 |
| Num_trans: | 27 |
| All_trans: | ENST00000479733.5:0 ENST00000398978.7:0 ENST00000354547.7:0 ENST00000357811.7:0 uc057tui.1:0 uc057tuj.1:0 uc057tuk.1:0 uc057tul.1:0 BC139913:0 AJ293624:0 NM_080805:-6 NM_080800:-6 NM_080802:-6 NM_080801:-6 NM_001130103:-6 NM_080798:-6 ENST00000520267.5:171 ENST00000398969.7:171 uc057tum.1:171 uc057tun.1:171 BC136385:171 ENST00000517713.5:477 ENST00000522165.5:477 ENST00000520133.5:477 uc057tuo.1:477 uc057tup.1:477 uc057tuq.1:477 |
TATA-Box annotation
| Distance to TSS: | 32 |
|---|---|
| Nearest PromoterID: | NM_080805 |
| Entrez ID: | 1305 |
| Nearest Unigene: | Hs.695934 |
| Nearest Refseq: | NM_005203 |
| Nearest Ensembl: | ENSG00000197467 |
| Gene Name: | collagen type XIII alpha 1 |
| Gene Alias: | CMS19 |
| Gene Description: | collagen type XIII alpha 1 chain |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
