Difference between revisions of "TSS:Hg 100333.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=-10 |entrez_id=54586 |gc_percent=0.462687 |gene_alias=AFAF|C9orf11|SPACA8 |gene_description=equatorin |gene_name=EQTN |gene_typ...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |C9orf11= | ||
| + | |SPACA8= | ||
| + | |all_trans=ENST00000380032.7:5 NM_001161585:5 NM_020641:5 uc003zql.4:5 AJ278482:5 ENST00000537675.5:8 ENST00000380031.2:8 uc011lnq.3:8 uc003zqm.4:8 BC014307:8 BC137351:35 BC137352:35 BC144602:35 KJ902669:89 ENST00000484994.1:404 uc064smi.1:404 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| + | |distance=5 | ||
|distance_to_tss=-10 | |distance_to_tss=-10 | ||
| + | |end=27297154 | ||
|entrez_id=54586 | |entrez_id=54586 | ||
|gc_percent=0.462687 | |gc_percent=0.462687 | ||
|gene_alias=AFAF|C9orf11|SPACA8 | |gene_alias=AFAF|C9orf11|SPACA8 | ||
|gene_description=equatorin | |gene_description=equatorin | ||
| − | |gene_name=EQTN | + | |gene_id=54586 |
| + | |gene_name=equatorin | ||
| + | |gene_source=HGNC:1359 | ||
| + | |gene_symbol=EQTN | ||
| + | |gene_synonyms=AFAF SPACA8 equatorin | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:1359 | ||
|nearest_ensembl=ENSG00000120160 | |nearest_ensembl=ENSG00000120160 | ||
|nearest_promoter_id=NM_020641 | |nearest_promoter_id=NM_020641 | ||
|nearest_refseq=NM_020641 | |nearest_refseq=NM_020641 | ||
|nearest_unigene=Hs.163070 | |nearest_unigene=Hs.163070 | ||
| + | |num_trans=16 | ||
| + | |species=human | ||
| + | |start=27297143 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000380032.7 NM_001161585 NM_020641 uc003zql.4 AJ278482 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100333.1 | |tss_id=hg_100333.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q9NQ60 | ||
}} | }} | ||
Revision as of 17:06, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000380032.7 NM_001161585 NM_020641 uc003zql.4 AJ278482 |
|---|---|
| Distance: | 5 |
| Num_trans: | 16 |
| All_trans: | ENST00000380032.7:5 NM_001161585:5 NM_020641:5 uc003zql.4:5 AJ278482:5 ENST00000537675.5:8 ENST00000380031.2:8 uc011lnq.3:8 uc003zqm.4:8 BC014307:8 BC137351:35 BC137352:35 BC144602:35 KJ902669:89 ENST00000484994.1:404 uc064smi.1:404 |
TATA-Box annotation
| Distance to TSS: | -10 |
|---|---|
| Nearest PromoterID: | NM_020641 |
| Entrez ID: | 54586 |
| Nearest Unigene: | Hs.163070 |
| Nearest Refseq: | NM_020641 |
| Nearest Ensembl: | ENSG00000120160 |
| Gene Name: | equatorin |
| Gene Alias: | AFAF |
| Gene Description: | equatorin |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.462687 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
