Difference between revisions of "TSS:Hg 105404.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.115 |distance_to_tss=89 |entrez_id=8879 |gc_percent=0.746269 |gene_alias=S1PL|SPL |gene_description=sphingosine-1-phosphate lyase 1 |gene_name=SGPL1...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |SPL= | ||
| + | |all_trans=AJ011304:-1 ENST00000373202.7:-63 uc001jrm.4:-63 AB033078:-63 ENST00000486993.1:-72 uc001jrl.3:-72 BC051238:-72 BC068061:-72 BC052991:-73 NM_003901:-85 AK314615:343 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| + | |distance=-1 | ||
|distance_to_tss=89 | |distance_to_tss=89 | ||
| + | |end=70816041 | ||
|entrez_id=8879 | |entrez_id=8879 | ||
|gc_percent=0.746269 | |gc_percent=0.746269 | ||
|gene_alias=S1PL|SPL | |gene_alias=S1PL|SPL | ||
|gene_description=sphingosine-1-phosphate lyase 1 | |gene_description=sphingosine-1-phosphate lyase 1 | ||
| − | |gene_name=SGPL1 | + | |gene_id=8879 |
| + | |gene_name=sphingosine-1-phosphate lyase 1 | ||
| + | |gene_source=HGNC:10817 | ||
| + | |gene_symbol=SGPL1 | ||
| + | |gene_synonyms=SPL | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:10817 | ||
|nearest_ensembl=ENSG00000166224 | |nearest_ensembl=ENSG00000166224 | ||
|nearest_promoter_id=NM_003901 | |nearest_promoter_id=NM_003901 | ||
|nearest_refseq=NM_003901 | |nearest_refseq=NM_003901 | ||
|nearest_unigene=Hs.499984 | |nearest_unigene=Hs.499984 | ||
| + | |num_trans=11 | ||
| + | |species=human | ||
| + | |start=70816032 | ||
| + | |strand=+ | ||
| + | |transcript_name=AJ011304 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105404.1 | |tss_id=hg_105404.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 21:34, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AJ011304 |
|---|---|
| Distance: | -1 |
| Num_trans: | 11 |
| All_trans: | AJ011304:-1 ENST00000373202.7:-63 uc001jrm.4:-63 AB033078:-63 ENST00000486993.1:-72 uc001jrl.3:-72 BC051238:-72 BC068061:-72 BC052991:-73 NM_003901:-85 AK314615:343 |
TATA-Box annotation
| Distance to TSS: | 89 |
|---|---|
| Nearest PromoterID: | NM_003901 |
| Entrez ID: | 8879 |
| Nearest Unigene: | Hs.499984 |
| Nearest Refseq: | NM_003901 |
| Nearest Ensembl: | ENSG00000166224 |
| Gene Name: | sphingosine-1-phosphate lyase 1 |
| Gene Alias: | S1PL |
| Gene Description: | sphingosine-1-phosphate lyase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.746269 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
