Difference between revisions of "TSS:Hg 105431.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.045 |distance_to_tss=7145 |entrez_id=414152 |gc_percent=0.59204 |gene_alias=- |gene_description=chromosome 10 open reading frame 105 |gene_name=C10o...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000398792.3:-68 uc001jsc.2:-68 AK093818:-68 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| + | |distance=-68 | ||
|distance_to_tss=7145 | |distance_to_tss=7145 | ||
| + | |end=71712680 | ||
|entrez_id=414152 | |entrez_id=414152 | ||
|gc_percent=0.59204 | |gc_percent=0.59204 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=chromosome 10 open reading frame 105 | |gene_description=chromosome 10 open reading frame 105 | ||
| − | |gene_name= | + | |gene_id=64072 |
| + | |gene_name=cadherin-related 23 | ||
| + | |gene_source=HGNC:13733 | ||
| + | |gene_symbol=CDH23 | ||
| + | |gene_synonyms=CDHR23 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:13733 | ||
|nearest_ensembl=ENSG00000214688 | |nearest_ensembl=ENSG00000214688 | ||
|nearest_promoter_id=NM_001164375 | |nearest_promoter_id=NM_001164375 | ||
|nearest_refseq=NM_001164375 | |nearest_refseq=NM_001164375 | ||
|nearest_unigene=Hs.568788 | |nearest_unigene=Hs.568788 | ||
| + | |num_trans=3 | ||
| + | |species=human | ||
| + | |start=71712671 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000398792.3 uc001jsc.2 AK093818 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105431.1 | |tss_id=hg_105431.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q8N1Z7 | ||
}} | }} | ||
Revision as of 21:35, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000398792.3 uc001jsc.2 AK093818 |
|---|---|
| Distance: | -68 |
| Num_trans: | 3 |
| All_trans: | ENST00000398792.3:-68 uc001jsc.2:-68 AK093818:-68 |
TATA-Box annotation
| Distance to TSS: | 7145 |
|---|---|
| Nearest PromoterID: | NM_001164375 |
| Entrez ID: | 414152 |
| Nearest Unigene: | Hs.568788 |
| Nearest Refseq: | NM_001164375 |
| Nearest Ensembl: | ENSG00000214688 |
| Gene Name: | cadherin-related 23 |
| Gene Alias: | - |
| Gene Description: | chromosome 10 open reading frame 105 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.59204 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
