Difference between revisions of "TSS:Hg 105512.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.11 |distance_to_tss=-12 |entrez_id=90550 |gc_percent=0.701493 |gene_alias=C10orf42|CCDC109A|HsMCU |gene_description=mitochondrial calcium uniporter...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CCDC109A= | ||
| + | |HsMCU= | ||
| + | |all_trans=ENST00000373053.7:9 NM_138357:9 NR_073062:9 NM_001270679:9 uc001jtc.3:9 BC034235:9 ENST00000603649.5:21 ENST00000604372.5:21 ENST00000604679.5:21 ENST00000357157.10:21 uc057tyt.1:21 uc057tyu.1:21 uc057tyv.1:21 uc009xqr.4:21 AK311133:21 AK310455:21 AK075439:21 AK315519:26 AK301475:28 JF432665:30 BC010682:52 ENST00000605597.5:497 ENST00000536019.5:497 NM_001270680:497 uc001jtd.4:497 uc057tyw.1:497 AK128016:497 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| + | |distance=9 | ||
|distance_to_tss=-12 | |distance_to_tss=-12 | ||
| + | |end=72692122 | ||
|entrez_id=90550 | |entrez_id=90550 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
|gene_alias=C10orf42|CCDC109A|HsMCU | |gene_alias=C10orf42|CCDC109A|HsMCU | ||
|gene_description=mitochondrial calcium uniporter | |gene_description=mitochondrial calcium uniporter | ||
| − | |gene_name=MCU | + | |gene_id=90550 |
| + | |gene_name=mitochondrial calcium uniporter | ||
| + | |gene_source=HGNC:23526 | ||
| + | |gene_symbol=MCU | ||
| + | |gene_synonyms=FLJ46135 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:23526 | ||
|nearest_ensembl=ENSG00000156026 | |nearest_ensembl=ENSG00000156026 | ||
|nearest_promoter_id=NR_073062 | |nearest_promoter_id=NR_073062 | ||
|nearest_refseq=NM_138357 | |nearest_refseq=NM_138357 | ||
|nearest_unigene=Hs.591366 | |nearest_unigene=Hs.591366 | ||
| + | |num_trans=27 | ||
| + | |species=human | ||
| + | |start=72692115 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000373053.7 NM_138357 NR_073062 NM_001270679 uc001jtc.3 BC034235 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105512.1 | |tss_id=hg_105512.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q8NE86 | ||
}} | }} | ||
Revision as of 21:38, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000373053.7 NM_138357 NR_073062 NM_001270679 uc001jtc.3 BC034235 |
|---|---|
| Distance: | 9 |
| Num_trans: | 27 |
| All_trans: | ENST00000373053.7:9 NM_138357:9 NR_073062:9 NM_001270679:9 uc001jtc.3:9 BC034235:9 ENST00000603649.5:21 ENST00000604372.5:21 ENST00000604679.5:21 ENST00000357157.10:21 uc057tyt.1:21 uc057tyu.1:21 uc057tyv.1:21 uc009xqr.4:21 AK311133:21 AK310455:21 AK075439:21 AK315519:26 AK301475:28 JF432665:30 BC010682:52 ENST00000605597.5:497 ENST00000536019.5:497 NM_001270680:497 uc001jtd.4:497 uc057tyw.1:497 AK128016:497 |
TATA-Box annotation
| Distance to TSS: | -12 |
|---|---|
| Nearest PromoterID: | NR_073062 |
| Entrez ID: | 90550 |
| Nearest Unigene: | Hs.591366 |
| Nearest Refseq: | NM_138357 |
| Nearest Ensembl: | ENSG00000156026 |
| Gene Name: | mitochondrial calcium uniporter |
| Gene Alias: | C10orf42 |
| Gene Description: | mitochondrial calcium uniporter |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
