Difference between revisions of "TSS:Hg 100356.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.105 |distance_to_tss=180 |entrez_id=203228 |gc_percent=0.666667 |gene_alias=ALSFTD|DENNL72|FTDALS|FTDALS1 |gene_description=chromosome 9 open readin...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |DENNL72= | ||
| + | |FTDALS= | ||
| + | |FTDALS1= | ||
| + | |all_trans=AL832229:-124 ENST00000488117.5:-125 uc064sml.1:-125 AL832467:-125 ENST00000380003.7:-127 uc003zqq.4:-127 AK291425:-160 NM_018325:-170 ENST00000379995.1:-432 uc064smm.1:-432 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| + | |distance=-124 | ||
|distance_to_tss=180 | |distance_to_tss=180 | ||
| + | |end=27573323 | ||
|entrez_id=203228 | |entrez_id=203228 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
|gene_alias=ALSFTD|DENNL72|FTDALS|FTDALS1 | |gene_alias=ALSFTD|DENNL72|FTDALS|FTDALS1 | ||
|gene_description=chromosome 9 open reading frame 72 | |gene_description=chromosome 9 open reading frame 72 | ||
| − | |gene_name=C9orf72 | + | |gene_id=203228 |
| + | |gene_name=chromosome 9 open reading frame 72 | ||
| + | |gene_source=HGNC:28337 | ||
| + | |gene_symbol=C9orf72 | ||
| + | |gene_synonyms=MGC23980 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:28337 | ||
|nearest_ensembl=ENSG00000147894 | |nearest_ensembl=ENSG00000147894 | ||
|nearest_promoter_id=NM_018325 | |nearest_promoter_id=NM_018325 | ||
|nearest_refseq=NM_018325 | |nearest_refseq=NM_018325 | ||
|nearest_unigene=Hs.493639 | |nearest_unigene=Hs.493639 | ||
| + | |num_trans=10 | ||
| + | |species=human | ||
| + | |start=27573302 | ||
| + | |strand=- | ||
| + | |transcript_name=AL832229 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100356.1 | |tss_id=hg_100356.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 17:07, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AL832229 |
|---|---|
| Distance: | -124 |
| Num_trans: | 10 |
| All_trans: | AL832229:-124 ENST00000488117.5:-125 uc064sml.1:-125 AL832467:-125 ENST00000380003.7:-127 uc003zqq.4:-127 AK291425:-160 NM_018325:-170 ENST00000379995.1:-432 uc064smm.1:-432 |
TATA-Box annotation
| Distance to TSS: | 180 |
|---|---|
| Nearest PromoterID: | NM_018325 |
| Entrez ID: | 203228 |
| Nearest Unigene: | Hs.493639 |
| Nearest Refseq: | NM_018325 |
| Nearest Ensembl: | ENSG00000147894 |
| Gene Name: | chromosome 9 open reading frame 72 |
| Gene Alias: | ALSFTD |
| Gene Description: | chromosome 9 open reading frame 72 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
