Difference between revisions of "TSS:Hg 105616.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=39321 |entrez_id=142891 |gc_percent=0.373134 |gene_alias=HEL-177|SMSr |gene_description=sterile alpha motif domain containing 8...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |SMSr= | ||
| + | |all_trans=DQ599338:-307 AB587437:-411 BC140219:-411 BC146556:-411 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance=-307 | ||
|distance_to_tss=39321 | |distance_to_tss=39321 | ||
| + | |end=75150973 | ||
|entrez_id=142891 | |entrez_id=142891 | ||
|gc_percent=0.373134 | |gc_percent=0.373134 | ||
| Line 12: | Line 17: | ||
|nearest_refseq=NM_144660 | |nearest_refseq=NM_144660 | ||
|nearest_unigene=Hs.744986 | |nearest_unigene=Hs.744986 | ||
| + | |num_trans=4 | ||
| + | |species=human | ||
| + | |start=75150939 | ||
| + | |strand=+ | ||
|tata_box="47(GTTTTTATAGTA,+,0.00)" | |tata_box="47(GTTTTTATAGTA,+,0.00)" | ||
| + | |transcript_name=DQ599338 | ||
| + | |tss_classification=no | ||
|tss_id=hg_105616.1 | |tss_id=hg_105616.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Revision as of 21:43, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | DQ599338 |
|---|---|
| Distance: | -307 |
| Num_trans: | 4 |
| All_trans: | DQ599338:-307 AB587437:-411 BC140219:-411 BC146556:-411 |
TATA-Box annotation
| Distance to TSS: | 39321 |
|---|---|
| Nearest PromoterID: | NM_144660 |
| Entrez ID: | 142891 |
| Nearest Unigene: | Hs.744986 |
| Nearest Refseq: | NM_144660 |
| Nearest Ensembl: | ENSG00000156671 |
| Gene Name: | SAMD8 |
| Gene Alias: | HEL-177 |
| Gene Description: | sterile alpha motif domain containing 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.373134 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "47(GTTTTTATAGTA,+,0.00)" |
