Difference between revisions of "TSS:Hg 105682.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.04 |distance_to_tss=217 |entrez_id=100132987 |gc_percent=0.517413 |gene_alias=- |gene_description=long intergenic non-protein coding RNA 856 |gene_n...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000423770.5:-18 ENST00000432742.1:-18 uc057ukn.1:-18 uc057uko.1:-18 ENST00000434974.1:-78 uc001jzv.4:-78 AK091031:-78 ENST00000624665.3:-86 uc010qlp.3:-86 AK294518:-86 NR_038985:-201 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| + | |distance=-18 | ||
|distance_to_tss=217 | |distance_to_tss=217 | ||
| + | |end=78248859 | ||
|entrez_id=100132987 | |entrez_id=100132987 | ||
|gc_percent=0.517413 | |gc_percent=0.517413 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=long intergenic non-protein coding RNA 856 | |gene_description=long intergenic non-protein coding RNA 856 | ||
| − | |gene_name=LINC00856 | + | |gene_id=100132987 |
| + | |gene_name=long intergenic non-protein coding RNA 856 | ||
| + | |gene_source=HGNC:45111 | ||
| + | |gene_symbol=LINC00856 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:45111 | ||
|nearest_ensembl=ENSG00000230417 | |nearest_ensembl=ENSG00000230417 | ||
|nearest_promoter_id=NR_038985 | |nearest_promoter_id=NR_038985 | ||
|nearest_refseq=NR_038985 | |nearest_refseq=NR_038985 | ||
|nearest_unigene=Hs.55047 | |nearest_unigene=Hs.55047 | ||
| + | |num_trans=11 | ||
| + | |species=human | ||
| + | |start=78248825 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000423770.5 ENST00000432742.1 uc057ukn.1 uc057uko.1 | ||
| + | |tss_classification=no | ||
|tss_id=hg_105682.1 | |tss_id=hg_105682.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 21:46, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000423770.5 ENST00000432742.1 uc057ukn.1 uc057uko.1 |
|---|---|
| Distance: | -18 |
| Num_trans: | 11 |
| All_trans: | ENST00000423770.5:-18 ENST00000432742.1:-18 uc057ukn.1:-18 uc057uko.1:-18 ENST00000434974.1:-78 uc001jzv.4:-78 AK091031:-78 ENST00000624665.3:-86 uc010qlp.3:-86 AK294518:-86 NR_038985:-201 |
TATA-Box annotation
| Distance to TSS: | 217 |
|---|---|
| Nearest PromoterID: | NR_038985 |
| Entrez ID: | 100132987 |
| Nearest Unigene: | Hs.55047 |
| Nearest Refseq: | NR_038985 |
| Nearest Ensembl: | ENSG00000230417 |
| Gene Name: | long intergenic non-protein coding RNA 856 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 856 |
| Gene Type: | ncRNA |
| CpG%: | 0.04 |
| GC%: | 0.517413 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
