Difference between revisions of "TSS:Hg 105844.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=-14 |entrez_id=219348 |gc_percent=0.437811 |gene_alias=- |gene_description=placenta specific 9 |gene_name=PLAC9 |gene_type=prot...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000372270.6:5 uc057umr.1:5 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance=5 | ||
|distance_to_tss=-14 | |distance_to_tss=-14 | ||
| + | |end=80131677 | ||
|entrez_id=219348 | |entrez_id=219348 | ||
|gc_percent=0.437811 | |gc_percent=0.437811 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=placenta specific 9 | |gene_description=placenta specific 9 | ||
| − | |gene_name=PLAC9 | + | |gene_id=219348 |
| + | |gene_name=placenta specific 9 | ||
| + | |gene_source=HGNC:19255 | ||
| + | |gene_symbol=PLAC9 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:19255 | ||
|nearest_ensembl=ENSG00000189129 | |nearest_ensembl=ENSG00000189129 | ||
|nearest_promoter_id=NR_138551 | |nearest_promoter_id=NR_138551 | ||
|nearest_refseq=NM_001012973 | |nearest_refseq=NM_001012973 | ||
|nearest_unigene=Hs.204947 | |nearest_unigene=Hs.204947 | ||
| + | |num_trans=2 | ||
| + | |species=human | ||
| + | |start=80131660 | ||
| + | |strand=+ | ||
|tata_box="-41(GGCTTTTAAAAG,-,0.00),-40(GCTTTTAAAAGA,+,0.00),-40(GCTTTTAAAAGA,-,0.00),-39(CTTTTAAAAGAT,+,0.00)" | |tata_box="-41(GGCTTTTAAAAG,-,0.00),-40(GCTTTTAAAAGA,+,0.00),-40(GCTTTTAAAAGA,-,0.00),-39(CTTTTAAAAGAT,+,0.00)" | ||
| + | |transcript_name=ENST00000372270.6 uc057umr.1 | ||
| + | |tss_classification=no | ||
|tss_id=hg_105844.1 | |tss_id=hg_105844.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5JTB4 | ||
}} | }} | ||
Revision as of 21:53, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000372270.6 uc057umr.1 |
|---|---|
| Distance: | 5 |
| Num_trans: | 2 |
| All_trans: | ENST00000372270.6:5 uc057umr.1:5 |
TATA-Box annotation
| Distance to TSS: | -14 |
|---|---|
| Nearest PromoterID: | NR_138551 |
| Entrez ID: | 219348 |
| Nearest Unigene: | Hs.204947 |
| Nearest Refseq: | NM_001012973 |
| Nearest Ensembl: | ENSG00000189129 |
| Gene Name: | placenta specific 9 |
| Gene Alias: | - |
| Gene Description: | placenta specific 9 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.437811 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-41(GGCTTTTAAAAG,-,0.00),-40(GCTTTTAAAAGA,+,0.00),-40(GCTTTTAAAAGA,-,0.00),-39(CTTTTAAAAGAT,+,0.00)" |
