Difference between revisions of "TSS:Hg 105846.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.13 |distance_to_tss=228 |entrez_id=219348 |gc_percent=0.721393 |gene_alias=- |gene_description=placenta specific 9 |gene_name=PLAC9 |gene_type=prote...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000372263.3:-2 uc001kbp.2:-2 HQ258029:20 KJ895824:20 EU446996:22 BC117332:-49 BC117334:-49 ENST00000372267.6:-132 uc057ums.1:-132 NM_001012973:-221 BC066348:-221 BC090922:-221 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| + | |distance=-2 | ||
|distance_to_tss=228 | |distance_to_tss=228 | ||
| + | |end=80132737 | ||
|entrez_id=219348 | |entrez_id=219348 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=placenta specific 9 | |gene_description=placenta specific 9 | ||
| − | |gene_name=PLAC9 | + | |gene_id=219348 |
| + | |gene_name=placenta specific 9 | ||
| + | |gene_source=HGNC:19255 | ||
| + | |gene_symbol=PLAC9 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:19255 | ||
|nearest_ensembl=ENSG00000189129 | |nearest_ensembl=ENSG00000189129 | ||
|nearest_promoter_id=NM_001331125 | |nearest_promoter_id=NM_001331125 | ||
|nearest_refseq=NM_001012973 | |nearest_refseq=NM_001012973 | ||
|nearest_unigene=Hs.204947 | |nearest_unigene=Hs.204947 | ||
| + | |num_trans=12 | ||
| + | |species=human | ||
| + | |start=80132722 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000372263.3 uc001kbp.2 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105846.1 | |tss_id=hg_105846.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5JTB6 | ||
}} | }} | ||
Revision as of 21:53, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000372263.3 uc001kbp.2 |
|---|---|
| Distance: | -2 |
| Num_trans: | 12 |
| All_trans: | ENST00000372263.3:-2 uc001kbp.2:-2 HQ258029:20 KJ895824:20 EU446996:22 BC117332:-49 BC117334:-49 ENST00000372267.6:-132 uc057ums.1:-132 NM_001012973:-221 BC066348:-221 BC090922:-221 |
TATA-Box annotation
| Distance to TSS: | 228 |
|---|---|
| Nearest PromoterID: | NM_001331125 |
| Entrez ID: | 219348 |
| Nearest Unigene: | Hs.204947 |
| Nearest Refseq: | NM_001012973 |
| Nearest Ensembl: | ENSG00000189129 |
| Gene Name: | placenta specific 9 |
| Gene Alias: | - |
| Gene Description: | placenta specific 9 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
