Difference between revisions of "TSS:Hg 87735.1"
From referenceTSS
| Line 4: | Line 4: | ||
|PCP2= | |PCP2= | ||
|TLD= | |TLD= | ||
| − | |all_trans=ENST00000520982.5:0 ENST00000520626. | + | |all_trans=ENST00000520982.5:0 ENST00000520626.6:0 ENST00000518656.5:0 BC136679:0 BC144365:0 BC144366:0 BC101763:0 BC101765:0 BC143338:0 ENST00000306349.13:16 ENST00000306385.10:16 NM_001199:16 NR_033403:16 NM_006129:16 NR_033404:16 AK291620:-17 M22488:21 BC142953:-28 ENST00000471755.5:44 ENST00000483364.5:44 ENST00000521385.5:44 Y08723:44 Y08724:44 Y08725:44 AB527418:49 KJ896503:49 U50330:50 ENST00000518913.5:-52 BC002593:-52 BC009305:-52 BC032105:-52 BC044626:-52 ENST00000520970.5:-117 AB209590:-117 ENST00000397814.7:-164 ENST00000354870.5:-164 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.14 | |cpg_percent=0.14 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-42 |
|end=22165356 | |end=22165356 | ||
|end_of_center_position=22165330 | |end_of_center_position=22165330 | ||
|entrez_id=649 | |entrez_id=649 | ||
|gc_percent=0.771144 | |gc_percent=0.771144 | ||
| − | |gene_alias=OI13 | + | |gene_alias=OI13{{!}}PCOLC{{!}}PCP{{!}}PCP2{{!}}TLD |
|gene_description=bone morphogenetic protein 1 | |gene_description=bone morphogenetic protein 1 | ||
|gene_id=649 | |gene_id=649 | ||
| Line 19: | Line 19: | ||
|gene_source=HGNC:1067 | |gene_source=HGNC:1067 | ||
|gene_symbol=BMP1 | |gene_symbol=BMP1 | ||
| − | |gene_synonyms= | + | |gene_synonyms=BMP-1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:1067 | |hgnc_mgi_id=HGNC:1067 | ||
|nearest_ensembl=ENSG00000168487 | |nearest_ensembl=ENSG00000168487 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_006129 |
|nearest_refseq=NM_001199 | |nearest_refseq=NM_001199 | ||
|nearest_unigene=Hs.1274 | |nearest_unigene=Hs.1274 | ||
| − | |num_trans= | + | |num_trans=36 |
|species=human | |species=human | ||
|start=22165303 | |start=22165303 | ||
|start_of_center_position=22165329 | |start_of_center_position=22165329 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000520982.5 ENST00000520626. | + | |transcript_name=ENST00000520982.5 ENST00000520626.6 ENST00000518656.5 BC136679 BC144365 BC144366 BC101763 BC101765 BC143338 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_87735.1 | |tss_id=hg_87735.1 | ||
Revision as of 17:31, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 22165329 |
|---|---|
| End of the center position in the TSS region: | 22165330 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000520982.5 ENST00000520626.6 ENST00000518656.5 BC136679 BC144365 BC144366 BC101763 BC101765 BC143338 |
|---|---|
| Distance: | 0 |
| Num_trans: | 36 |
| All_trans: | ENST00000520982.5:0 ENST00000520626.6:0 ENST00000518656.5:0 BC136679:0 BC144365:0 BC144366:0 BC101763:0 BC101765:0 BC143338:0 ENST00000306349.13:16 ENST00000306385.10:16 NM_001199:16 NR_033403:16 NM_006129:16 NR_033404:16 AK291620:-17 M22488:21 BC142953:-28 ENST00000471755.5:44 ENST00000483364.5:44 ENST00000521385.5:44 Y08723:44 Y08724:44 Y08725:44 AB527418:49 KJ896503:49 U50330:50 ENST00000518913.5:-52 BC002593:-52 BC009305:-52 BC032105:-52 BC044626:-52 ENST00000520970.5:-117 AB209590:-117 ENST00000397814.7:-164 ENST00000354870.5:-164 |
TATA-Box annotation
| Distance to TSS: | -42 |
|---|---|
| Nearest PromoterID: | NM_006129 |
| Entrez ID: | 649 |
| Nearest Unigene: | Hs.1274 |
| Nearest Refseq: | NM_001199 |
| Nearest Ensembl: | ENSG00000168487 |
| Gene Name: | bone morphogenetic protein 1 |
| Gene Alias: | OI13|PCOLC|PCP|PCP2|TLD |
| Gene Description: | bone morphogenetic protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.14 |
| GC%: | 0.771144 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
