Difference between revisions of "TSS:Hg 87975.1"
From referenceTSS
| Line 2: | Line 2: | ||
|NF-M= | |NF-M= | ||
|NFM= | |NFM= | ||
| − | |all_trans=ENST00000523467.1:0 ENST00000518131.5:0 ENST00000521540.1:0 ENST00000437366.2:0 NM_005382 | + | |all_trans=ENST00000523467.1:0 ENST00000518131.5:0 ENST00000221166.10:0 ENST00000521540.1:0 ENST00000437366.2:0 NM_005382:0 BC071752:0 EF560736:0 AK296226:0 EF560737:0 BC096757:1 GQ129242:18 GQ129243:18 KJ897236:25 AB527839:25 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| Line 11: | Line 11: | ||
|entrez_id=4741 | |entrez_id=4741 | ||
|gc_percent=0.726368 | |gc_percent=0.726368 | ||
| − | |gene_alias=NEF3 | + | |gene_alias=NEF3{{!}}NF-M{{!}}NFM |
|gene_description=neurofilament medium | |gene_description=neurofilament medium | ||
|gene_id=4741 | |gene_id=4741 | ||
| − | |gene_name= | + | |gene_name=neurofilament medium chain |
|gene_source=HGNC:7734 | |gene_source=HGNC:7734 | ||
|gene_symbol=NEFM | |gene_symbol=NEFM | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_005382 | |nearest_refseq=NM_005382 | ||
|nearest_unigene=Hs.458657 | |nearest_unigene=Hs.458657 | ||
| − | |num_trans= | + | |num_trans=15 |
|species=human | |species=human | ||
|start=24913752 | |start=24913752 | ||
|start_of_center_position=24913760 | |start_of_center_position=24913760 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-34(GGCTATAAATGG,-,0.00) |
| − | |transcript_name=ENST00000523467.1 ENST00000518131.5 ENST00000521540.1 ENST00000437366.2 NM_005382 | + | |transcript_name=ENST00000523467.1 ENST00000518131.5 ENST00000221166.10 ENST00000521540.1 ENST00000437366.2 NM_005382 BC071752 EF560736 AK296226 EF560737 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_87975.1 | |tss_id=hg_87975.1 | ||
Revision as of 17:37, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 24913760 |
|---|---|
| End of the center position in the TSS region: | 24913761 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000523467.1 ENST00000518131.5 ENST00000221166.10 ENST00000521540.1 ENST00000437366.2 NM_005382 BC071752 EF560736 AK296226 EF560737 |
|---|---|
| Distance: | 0 |
| Num_trans: | 15 |
| All_trans: | ENST00000523467.1:0 ENST00000518131.5:0 ENST00000221166.10:0 ENST00000521540.1:0 ENST00000437366.2:0 NM_005382:0 BC071752:0 EF560736:0 AK296226:0 EF560737:0 BC096757:1 GQ129242:18 GQ129243:18 KJ897236:25 AB527839:25 |
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_005382 |
| Entrez ID: | 4741 |
| Nearest Unigene: | Hs.458657 |
| Nearest Refseq: | NM_005382 |
| Nearest Ensembl: | ENSG00000104722 |
| Gene Name: | neurofilament medium chain |
| Gene Alias: | NEF3|NF-M|NFM |
| Gene Description: | neurofilament medium |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.726368 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(GGCTATAAATGG,-,0.00) |
