Difference between revisions of "TSS:Mm 5507.1"
From referenceTSS
| Line 2: | Line 2: | ||
|6330578E17Rik= | |6330578E17Rik= | ||
|Pet191= | |Pet191= | ||
| − | |all_trans=ENSMUST00000027286.6:-23 NM_198006 | + | |all_trans=ENSMUST00000027286.6:-23 NM_198006:-23 AK169639:28 AK166651:40 BC002137:62 AK050432:63 ENSMUST00000192179.1:72 AK040907:72 AK018255:94 AK177444:148 AK218336:148 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| Line 11: | Line 11: | ||
|entrez_id=76178 | |entrez_id=76178 | ||
|gc_percent=0.651741 | |gc_percent=0.651741 | ||
| − | |gene_alias=1700001A24Rik | + | |gene_alias=1700001A24Rik{{!}}6330578E17Rik{{!}}Pet191 |
|gene_description=cytochrome C oxidase assembly factor 5 | |gene_description=cytochrome C oxidase assembly factor 5 | ||
|gene_id=76178 | |gene_id=76178 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_198006 | |nearest_refseq=NM_198006 | ||
|nearest_unigene=Mm.28085 | |nearest_unigene=Mm.28085 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=mouse | |species=mouse | ||
|start=37430071 | |start=37430071 | ||
|start_of_center_position=37430075 | |start_of_center_position=37430075 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000027286.6 NM_198006 | + | |transcript_name=ENSMUST00000027286.6 NM_198006 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_5507.1 | |tss_id=mm_5507.1 | ||
Revision as of 11:03, 21 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 37430075 |
|---|---|
| End of the center position in the TSS region: | 37430076 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000027286.6 NM_198006 |
|---|---|
| Distance: | -23 |
| Num_trans: | 11 |
| All_trans: | ENSMUST00000027286.6:-23 NM_198006:-23 AK169639:28 AK166651:40 BC002137:62 AK050432:63 ENSMUST00000192179.1:72 AK040907:72 AK018255:94 AK177444:148 AK218336:148 |
TATA-Box annotation
| Distance to TSS: | 27 |
|---|---|
| Nearest PromoterID: | NM_198006 |
| Entrez ID: | 76178 |
| Nearest Unigene: | Mm.28085 |
| Nearest Refseq: | NM_198006 |
| Nearest Ensembl: | ENSMUSG00000026112 |
| Gene Name: | cytochrome C oxidase assembly factor 5 |
| Gene Alias: | 1700001A24Rik|6330578E17Rik|Pet191 |
| Gene Description: | cytochrome C oxidase assembly factor 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.651741 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
