Difference between revisions of "TSS:Hg 10221.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000641940.1:6 | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| − | |distance= | + | |distance=6 |
|distance_to_tss=-11578 | |distance_to_tss=-11578 | ||
|end=9440578 | |end=9440578 | ||
| Line 9: | Line 10: | ||
|gc_percent=0.517413 | |gc_percent=0.517413 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description= | + | |gene_description=long intergenic non-protein coding RNA 2606 |
| − | |gene_name= | + | |gene_id=100506022 |
| + | |gene_name=long intergenic non-protein coding RNA 2606 | ||
| + | |gene_source=HGNC:54047 | ||
| + | |gene_symbol=LINC02606 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| − | |nearest_ensembl= | + | |hgnc_mgi_id=HGNC:54047 |
| + | |nearest_ensembl=ENSG00000284693 | ||
|nearest_promoter_id=NR_104622 | |nearest_promoter_id=NR_104622 | ||
|nearest_refseq=NR_104622 | |nearest_refseq=NR_104622 | ||
|nearest_unigene=Hs.131775 | |nearest_unigene=Hs.131775 | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=9440569 | |start=9440569 | ||
|start_of_center_position=9440573 | |start_of_center_position=9440573 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-35(TTCCTTATAAAG,-,0.00),-33(CCTTATAAAGCA,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000641940.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_10221.1 | |tss_id=hg_10221.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 16:58, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 9440573 |
|---|---|
| End of the center position in the TSS region: | 9440574 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000641940.1 |
|---|---|
| Distance: | 6 |
| Num_trans: | 1 |
| All_trans: | ENST00000641940.1:6 |
TATA-Box annotation
| Distance to TSS: | -11578 |
|---|---|
| Nearest PromoterID: | NR_104622 |
| Entrez ID: | 100506022 |
| Nearest Unigene: | Hs.131775 |
| Nearest Refseq: | NR_104622 |
| Nearest Ensembl: | ENSG00000284693 |
| Gene Name: | long intergenic non-protein coding RNA 2606 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 2606 |
| Gene Type: | ncRNA |
| CpG%: | 0.025 |
| GC%: | 0.517413 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -35(TTCCTTATAAAG,-,0.00),-33(CCTTATAAAGCA,+,0.00) |
