Difference between revisions of "TSS:Hg 10245.1"
From referenceTSS
| Line 7: | Line 7: | ||
|alcalpha1= | |alcalpha1= | ||
|alcalpha2= | |alcalpha2= | ||
| − | |all_trans=AK304813:0 ENST00000361311 | + | |all_trans=ENST00000377298.9:0 NM_001009566:0 AK304813:0 LF212990:0 MA448567:0 ENST00000361311.4:-5 BC033902:-5 AK289798:220 AY753301:221 DQ891263:221 DQ894450:221 AB587312:221 ENST00000650348.1:285 LF211968:-419 MA447545:-419 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.175 | |cpg_percent=0.175 | ||
| Line 16: | Line 16: | ||
|entrez_id=22883 | |entrez_id=22883 | ||
|gc_percent=0.79602 | |gc_percent=0.79602 | ||
| − | |gene_alias=ALC-ALPHA | + | |gene_alias=ALC-ALPHA{{!}}CDHR12{{!}}CST-1{{!}}CSTN1{{!}}PIK3CD{{!}}XB31alpha{{!}}alcalpha1{{!}}alcalpha2 |
|gene_description=calsyntenin 1 | |gene_description=calsyntenin 1 | ||
|gene_id=22883 | |gene_id=22883 | ||
| Line 26: | Line 26: | ||
|hgnc_mgi_id=HGNC:17447 | |hgnc_mgi_id=HGNC:17447 | ||
|nearest_ensembl=ENSG00000171603 | |nearest_ensembl=ENSG00000171603 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_014944 |
|nearest_refseq=NM_014944 | |nearest_refseq=NM_014944 | ||
|nearest_unigene=Hs.29665 | |nearest_unigene=Hs.29665 | ||
| − | |num_trans= | + | |num_trans=15 |
|species=human | |species=human | ||
|start=9823953 | |start=9823953 | ||
|start_of_center_position=9823966 | |start_of_center_position=9823966 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=AK304813 | + | |transcript_name=ENST00000377298.9 NM_001009566 AK304813 LF212990 MA448567 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10245.1 | |tss_id=hg_10245.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B4E3Q1 | + | |uniprot_id=B4E3Q1 O94985 |
}} | }} | ||
Revision as of 17:04, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 9823966 |
|---|---|
| End of the center position in the TSS region: | 9823967 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000377298.9 NM_001009566 AK304813 LF212990 MA448567 |
|---|---|
| Distance: | 0 |
| Num_trans: | 15 |
| All_trans: | ENST00000377298.9:0 NM_001009566:0 AK304813:0 LF212990:0 MA448567:0 ENST00000361311.4:-5 BC033902:-5 AK289798:220 AY753301:221 DQ891263:221 DQ894450:221 AB587312:221 ENST00000650348.1:285 LF211968:-419 MA447545:-419 |
TATA-Box annotation
| Distance to TSS: | 560 |
|---|---|
| Nearest PromoterID: | NM_014944 |
| Entrez ID: | 22883 |
| Nearest Unigene: | Hs.29665 |
| Nearest Refseq: | NM_014944 |
| Nearest Ensembl: | ENSG00000171603 |
| Gene Name: | calsyntenin 1 |
| Gene Alias: | ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2 |
| Gene Description: | calsyntenin 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.175 |
| GC%: | 0.79602 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
