Difference between revisions of "TSS:Hg 10301.1"
From referenceTSS
| Line 4: | Line 4: | ||
|NFB42= | |NFB42= | ||
|OCP1= | |OCP1= | ||
| − | |all_trans= | + | |all_trans=AF187318:0 BC014957:195 BC096747:213 AK313019:213 ENST00000354287.5:215 NM_012168:215 BC025233:229 AK308531:300 DQ892848:302 DQ892849:302 DQ896095:302 CR542110:304 KJ898609:304 CU692940:304 AB463629:304 ENST00000466919.1:447 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-172 |
|end=11654726 | |end=11654726 | ||
|end_of_center_position=11654685 | |end_of_center_position=11654685 | ||
| − | |entrez_id= | + | |entrez_id=93611 |
|gc_percent=0.651741 | |gc_percent=0.651741 | ||
| − | |gene_alias= | + | |gene_alias=FBG3{{!}}FBX30{{!}}FBX6A{{!}}Fbx44{{!}}Fbxo6a |
| − | |gene_description=F-box protein | + | |gene_description=F-box protein 44 |
|gene_id=26232 | |gene_id=26232 | ||
|gene_name=F-box protein 2 | |gene_name=F-box protein 2 | ||
| Line 22: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:13581 | |hgnc_mgi_id=HGNC:13581 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000132879 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_130909 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_033182 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.556006 |
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=11654643 | |start=11654643 | ||
|start_of_center_position=11654684 | |start_of_center_position=11654684 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=AF187318 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10301.1 | |tss_id=hg_10301.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 17:17, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 11654684 |
|---|---|
| End of the center position in the TSS region: | 11654685 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AF187318 |
|---|---|
| Distance: | 0 |
| Num_trans: | 16 |
| All_trans: | AF187318:0 BC014957:195 BC096747:213 AK313019:213 ENST00000354287.5:215 NM_012168:215 BC025233:229 AK308531:300 DQ892848:302 DQ892849:302 DQ896095:302 CR542110:304 KJ898609:304 CU692940:304 AB463629:304 ENST00000466919.1:447 |
TATA-Box annotation
| Distance to TSS: | -172 |
|---|---|
| Nearest PromoterID: | NR_130909 |
| Entrez ID: | 93611 |
| Nearest Unigene: | Hs.556006 |
| Nearest Refseq: | NM_033182 |
| Nearest Ensembl: | ENSG00000132879 |
| Gene Name: | F-box protein 2 |
| Gene Alias: | FBG3|FBX30|FBX6A|Fbx44|Fbxo6a |
| Gene Description: | F-box protein 44 |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.651741 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
