Difference between revisions of "TSS:Hg 10302.1"
From referenceTSS
| Line 4: | Line 4: | ||
|NFB42= | |NFB42= | ||
|OCP1= | |OCP1= | ||
| − | |all_trans= | + | |all_trans=AF187318:114 BC014957:347 BC096747:365 AK313019:365 ENST00000354287.5:367 NM_012168:367 BC025233:381 AK308531:452 DQ892848:454 DQ892849:454 DQ896095:454 CR542110:456 KJ898609:456 CU692940:456 AB463629:456 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| − | |distance= | + | |distance=114 |
| − | |distance_to_tss= | + | |distance_to_tss=-38 |
|end=11654842 | |end=11654842 | ||
|end_of_center_position=11654819 | |end_of_center_position=11654819 | ||
| − | |entrez_id= | + | |entrez_id=93611 |
|gc_percent=0.766169 | |gc_percent=0.766169 | ||
| − | |gene_alias= | + | |gene_alias=FBG3{{!}}FBX30{{!}}FBX6A{{!}}Fbx44{{!}}Fbxo6a |
| − | |gene_description=F-box protein | + | |gene_description=F-box protein 44 |
|gene_id=26232 | |gene_id=26232 | ||
|gene_name=F-box protein 2 | |gene_name=F-box protein 2 | ||
| Line 22: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:13581 | |hgnc_mgi_id=HGNC:13581 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000132879 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_130909 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_033182 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.556006 |
| − | |num_trans= | + | |num_trans=15 |
|species=human | |species=human | ||
|start=11654795 | |start=11654795 | ||
|start_of_center_position=11654818 | |start_of_center_position=11654818 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=AF187318 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10302.1 | |tss_id=hg_10302.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 17:17, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 11654818 |
|---|---|
| End of the center position in the TSS region: | 11654819 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AF187318 |
|---|---|
| Distance: | 114 |
| Num_trans: | 15 |
| All_trans: | AF187318:114 BC014957:347 BC096747:365 AK313019:365 ENST00000354287.5:367 NM_012168:367 BC025233:381 AK308531:452 DQ892848:454 DQ892849:454 DQ896095:454 CR542110:456 KJ898609:456 CU692940:456 AB463629:456 |
TATA-Box annotation
| Distance to TSS: | -38 |
|---|---|
| Nearest PromoterID: | NR_130909 |
| Entrez ID: | 93611 |
| Nearest Unigene: | Hs.556006 |
| Nearest Refseq: | NM_033182 |
| Nearest Ensembl: | ENSG00000132879 |
| Gene Name: | F-box protein 2 |
| Gene Alias: | FBG3|FBX30|FBX6A|Fbx44|Fbxo6a |
| Gene Description: | F-box protein 44 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.766169 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
