Difference between revisions of "TSS:Hg 10303.1"
From referenceTSS
| Line 3: | Line 3: | ||
|POLZ2= | |POLZ2= | ||
|REV7= | |REV7= | ||
| − | |all_trans=ENST00000445656.5:-133 ENST00000376664.10 | + | |all_trans=ENST00000445656.5:-133 ENST00000376664.10:-133 ENST00000376669.9:-140 AK027327:-149 AF139365:-152 ENST00000456915.1:-153 ENST00000376692.9:-170 NM_006341:-170 AF157482:-236 AF080398:309 AF072933:310 BC015244:320 CU677251:322 DQ891038:322 DQ894217:322 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
|distance=-133 | |distance=-133 | ||
| − | |distance_to_tss= | + | |distance_to_tss=198 |
|end=11680978 | |end=11680978 | ||
|end_of_center_position=11680951 | |end_of_center_position=11680951 | ||
|entrez_id=10459 | |entrez_id=10459 | ||
|gc_percent=0.691542 | |gc_percent=0.691542 | ||
| − | |gene_alias=FANCV | + | |gene_alias=FANCV{{!}}MAD2B{{!}}POLZ2{{!}}REV7 |
| − | |gene_description= | + | |gene_description=mitotic arrest deficient 2 like 2 |
|gene_id=10459 | |gene_id=10459 | ||
| − | |gene_name= | + | |gene_name=mitotic arrest deficient 2 like 2 |
|gene_source=HGNC:6764 | |gene_source=HGNC:6764 | ||
|gene_symbol=MAD2L2 | |gene_symbol=MAD2L2 | ||
| − | |gene_synonyms=MAD2B POLZ2 REV7 | + | |gene_synonyms=FANCV MAD2B POLZ2 REV7 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:6764 | |hgnc_mgi_id=HGNC:6764 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_006341 | |nearest_refseq=NM_006341 | ||
|nearest_unigene=Hs.19400 | |nearest_unigene=Hs.19400 | ||
| − | |num_trans= | + | |num_trans=15 |
|species=human | |species=human | ||
|start=11680922 | |start=11680922 | ||
|start_of_center_position=11680950 | |start_of_center_position=11680950 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=71(CCTTTTCGGGGG,+,0.00) |
| − | |transcript_name=ENST00000445656.5 ENST00000376664.10 | + | |transcript_name=ENST00000445656.5 ENST00000376664.10 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10303.1 | |tss_id=hg_10303.1 | ||
Revision as of 17:17, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 11680950 |
|---|---|
| End of the center position in the TSS region: | 11680951 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000445656.5 ENST00000376664.10 |
|---|---|
| Distance: | -133 |
| Num_trans: | 15 |
| All_trans: | ENST00000445656.5:-133 ENST00000376664.10:-133 ENST00000376669.9:-140 AK027327:-149 AF139365:-152 ENST00000456915.1:-153 ENST00000376692.9:-170 NM_006341:-170 AF157482:-236 AF080398:309 AF072933:310 BC015244:320 CU677251:322 DQ891038:322 DQ894217:322 |
TATA-Box annotation
| Distance to TSS: | 198 |
|---|---|
| Nearest PromoterID: | NM_006341 |
| Entrez ID: | 10459 |
| Nearest Unigene: | Hs.19400 |
| Nearest Refseq: | NM_006341 |
| Nearest Ensembl: | ENSG00000116670 |
| Gene Name: | mitotic arrest deficient 2 like 2 |
| Gene Alias: | FANCV|MAD2B|POLZ2|REV7 |
| Gene Description: | mitotic arrest deficient 2 like 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 71(CCTTTTCGGGGG,+,0.00) |
