Difference between revisions of "TSS:Hg 10459.1"
From referenceTSS
| Line 4: | Line 4: | ||
|MCH6= | |MCH6= | ||
|PPP1R56= | |PPP1R56= | ||
| − | |all_trans=ENST00000348549.9:0 | + | |all_trans=ENST00000348549.9:0 BC006463:50 ENST00000546424.5:-76 NM_001278054:-76 NR_102733:-76 NR_102732:-76 AB209147:-76 U60521:100 AB015653:124 AK292111:124 ENST00000440484.1:128 AK292080:129 ENST00000333868.10:130 ENST00000546969.1:130 NM_001229:130 BC002452:139 HQ447255:140 KJ890829:140 AB590140:140 U56390:142 DQ891693:143 CU675417:144 ENST00000474305.2:145 AY732490:145 AF093130:145 AB020979:145 AF110376:145 AJ781267:145 BT006911:145 ENST00000400777.7:153 ENST00000375890.8:-357 AK303743:-357 NM_032996:-421 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| Line 13: | Line 13: | ||
|entrez_id=842 | |entrez_id=842 | ||
|gc_percent=0.776119 | |gc_percent=0.776119 | ||
| − | |gene_alias=APAF-3 | + | |gene_alias=APAF-3{{!}}APAF3{{!}}ICE-LAP6{{!}}MCH6{{!}}PPP1R56 |
|gene_description=caspase 9 | |gene_description=caspase 9 | ||
|gene_id=842 | |gene_id=842 | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_001229 | |nearest_refseq=NM_001229 | ||
|nearest_unigene=Hs.329502 | |nearest_unigene=Hs.329502 | ||
| − | |num_trans= | + | |num_trans=33 |
|species=human | |species=human | ||
|start=15524344 | |start=15524344 | ||
|start_of_center_position=15524356 | |start_of_center_position=15524356 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000348549.9 | + | |transcript_name=ENST00000348549.9 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10459.1 | |tss_id=hg_10459.1 | ||
Revision as of 17:54, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 15524356 |
|---|---|
| End of the center position in the TSS region: | 15524357 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000348549.9 |
|---|---|
| Distance: | 0 |
| Num_trans: | 33 |
| All_trans: | ENST00000348549.9:0 BC006463:50 ENST00000546424.5:-76 NM_001278054:-76 NR_102733:-76 NR_102732:-76 AB209147:-76 U60521:100 AB015653:124 AK292111:124 ENST00000440484.1:128 AK292080:129 ENST00000333868.10:130 ENST00000546969.1:130 NM_001229:130 BC002452:139 HQ447255:140 KJ890829:140 AB590140:140 U56390:142 DQ891693:143 CU675417:144 ENST00000474305.2:145 AY732490:145 AF093130:145 AB020979:145 AF110376:145 AJ781267:145 BT006911:145 ENST00000400777.7:153 ENST00000375890.8:-357 AK303743:-357 NM_032996:-421 |
TATA-Box annotation
| Distance to TSS: | 88 |
|---|---|
| Nearest PromoterID: | NM_001278054 |
| Entrez ID: | 842 |
| Nearest Unigene: | Hs.329502 |
| Nearest Refseq: | NM_001229 |
| Nearest Ensembl: | ENSG00000132906 |
| Gene Name: | caspase 9 |
| Gene Alias: | APAF-3|APAF3|ICE-LAP6|MCH6|PPP1R56 |
| Gene Description: | caspase 9 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.776119 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
