Difference between revisions of "TSS:Hg 1060.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.12 |distance_to_tss=68 |entrez_id=54896 |gc_percent=0.78607 |gene_alias=- |gene_description=PQ loop repeat containing 2 |gene_name=PQLC2 |gene_type=...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000375155.7:0 ENST00000375153.7:0 ENST00000469076.5:0 uc001bby.4:0 uc001bca.4:0 uc057cwq.1:0 AK130175:0 AK000327:0 AK125580:0 AK130171:0 AK172745:0 ENST00000400548.6:7 uc001bbz.4:7 BC015324:7 BC021040:25 NM_001287531:-49 NM_017765:-49 NM_001040126:-49 NM_001040125:-49 NR_109848:-49 ENST00000497827.1:395 uc057cwr.1:395 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| + | |distance=0 | ||
|distance_to_tss=68 | |distance_to_tss=68 | ||
| + | |end=19312334 | ||
|entrez_id=54896 | |entrez_id=54896 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=PQ loop repeat containing 2 | |gene_description=PQ loop repeat containing 2 | ||
| − | |gene_name=PQLC2 | + | |gene_id=54896 |
| + | |gene_name=PQ loop repeat containing 2 | ||
| + | |gene_source=HGNC:26001 | ||
| + | |gene_symbol=PQLC2 | ||
| + | |gene_synonyms=FLJ20320 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:26001 | ||
|nearest_ensembl=ENSG00000040487 | |nearest_ensembl=ENSG00000040487 | ||
|nearest_promoter_id=NM_001040125 | |nearest_promoter_id=NM_001040125 | ||
|nearest_refseq=NM_017765 | |nearest_refseq=NM_017765 | ||
|nearest_unigene=Hs.647620 | |nearest_unigene=Hs.647620 | ||
| + | |num_trans=22 | ||
| + | |species=human | ||
| + | |start=19312294 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000375155.7 ENST00000375153.7 ENST00000469076.5 uc001bby.4 uc001bca.4 uc057cwq.1 AK130175 AK000327 AK125580 AK130171 AK172745 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_1060.1 | |tss_id=hg_1060.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A024RA97 E9PL93 Q6ZP29 | ||
}} | }} | ||
Revision as of 21:59, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000375155.7 ENST00000375153.7 ENST00000469076.5 uc001bby.4 uc001bca.4 uc057cwq.1 AK130175 AK000327 AK125580 AK130171 AK172745 |
|---|---|
| Distance: | 0 |
| Num_trans: | 22 |
| All_trans: | ENST00000375155.7:0 ENST00000375153.7:0 ENST00000469076.5:0 uc001bby.4:0 uc001bca.4:0 uc057cwq.1:0 AK130175:0 AK000327:0 AK125580:0 AK130171:0 AK172745:0 ENST00000400548.6:7 uc001bbz.4:7 BC015324:7 BC021040:25 NM_001287531:-49 NM_017765:-49 NM_001040126:-49 NM_001040125:-49 NR_109848:-49 ENST00000497827.1:395 uc057cwr.1:395 |
TATA-Box annotation
| Distance to TSS: | 68 |
|---|---|
| Nearest PromoterID: | NM_001040125 |
| Entrez ID: | 54896 |
| Nearest Unigene: | Hs.647620 |
| Nearest Refseq: | NM_017765 |
| Nearest Ensembl: | ENSG00000040487 |
| Gene Name: | PQ loop repeat containing 2 |
| Gene Alias: | - |
| Gene Description: | PQ loop repeat containing 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
