Difference between revisions of "TSS:Hg 242835.1"
From referenceTSS
| Line 2: | Line 2: | ||
|M-SemaK= | |M-SemaK= | ||
|SEMAH= | |SEMAH= | ||
| + | |all_trans=AK291202:-57 ENST00000517366.1:160 ENST00000520262.6:172 NM_001257180:172 LF371616:424 MA607193:424 | ||
|chr=chr7 | |chr=chr7 | ||
|coll-5= | |coll-5= | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance= | + | |distance=-57 |
|distance_to_tss=178376 | |distance_to_tss=178376 | ||
|end=83463059 | |end=83463059 | ||
| Line 11: | Line 12: | ||
|entrez_id=9723 | |entrez_id=9723 | ||
|gc_percent=0.462687 | |gc_percent=0.462687 | ||
| − | |gene_alias=M-SEMAH | + | |gene_alias=M-SEMAH{{!}}M-SemaK{{!}}SEMAH{{!}}coll-5 |
|gene_description=semaphorin 3E | |gene_description=semaphorin 3E | ||
| − | |gene_name= | + | |gene_id=6575 |
| + | |gene_name=solute carrier family 20 member 2 | ||
| + | |gene_source=HGNC:10947 | ||
| + | |gene_symbol=SLC20A2 | ||
| + | |gene_synonyms=Glvr-2 PiT-2 Ram-1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:10947 | ||
|nearest_ensembl=ENSG00000170381 | |nearest_ensembl=ENSG00000170381 | ||
|nearest_promoter_id=NM_001178129 | |nearest_promoter_id=NM_001178129 | ||
|nearest_refseq=NM_012431 | |nearest_refseq=NM_012431 | ||
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.440730 |
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=83463051 | |start=83463051 | ||
|start_of_center_position=42501402 | |start_of_center_position=42501402 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=AK291202 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_242835.1 | |tss_id=hg_242835.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 16:24, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 42501402 |
|---|---|
| End of the center position in the TSS region: | 42501403 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK291202 |
|---|---|
| Distance: | -57 |
| Num_trans: | 6 |
| All_trans: | AK291202:-57 ENST00000517366.1:160 ENST00000520262.6:172 NM_001257180:172 LF371616:424 MA607193:424 |
TATA-Box annotation
| Distance to TSS: | 178376 |
|---|---|
| Nearest PromoterID: | NM_001178129 |
| Entrez ID: | 9723 |
| Nearest Unigene: | Hs.440730 |
| Nearest Refseq: | NM_012431 |
| Nearest Ensembl: | ENSG00000170381 |
| Gene Name: | solute carrier family 20 member 2 |
| Gene Alias: | M-SEMAH|M-SemaK|SEMAH|coll-5 |
| Gene Description: | semaphorin 3E |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.462687 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
