Difference between revisions of "TSS:Hg 92912.1"
From referenceTSS
| Line 8: | Line 8: | ||
|RAM1= | |RAM1= | ||
|Ram-1= | |Ram-1= | ||
| − | |all_trans=ENST00000522707 | + | |all_trans=ENST00000522707.1:-116 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance=-116 | |distance=-116 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-1274 |
|end=42502512 | |end=42502512 | ||
|end_of_center_position=42502505 | |end_of_center_position=42502505 | ||
|entrez_id=6575 | |entrez_id=6575 | ||
|gc_percent=0.517413 | |gc_percent=0.517413 | ||
| − | |gene_alias=GLVR-2 | + | |gene_alias=GLVR-2{{!}}GLVR2{{!}}IBGC1{{!}}IBGC3{{!}}MLVAR{{!}}PIT-2{{!}}PIT2{{!}}RAM1{{!}}Ram-1 |
|gene_description=solute carrier family 20 member 2 | |gene_description=solute carrier family 20 member 2 | ||
|gene_id=6575 | |gene_id=6575 | ||
| Line 30: | Line 30: | ||
|nearest_refseq=NM_006749 | |nearest_refseq=NM_006749 | ||
|nearest_unigene=Hs.653173 | |nearest_unigene=Hs.653173 | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=42502497 | |start=42502497 | ||
|start_of_center_position=42502504 | |start_of_center_position=42502504 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=88(GGCTTTTTAAGC,-,0.00) |
| − | |transcript_name=ENST00000522707 | + | |transcript_name=ENST00000522707.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_92912.1 | |tss_id=hg_92912.1 | ||
Revision as of 19:32, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 42502504 |
|---|---|
| End of the center position in the TSS region: | 42502505 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000522707.1 |
|---|---|
| Distance: | -116 |
| Num_trans: | 1 |
| All_trans: | ENST00000522707.1:-116 |
TATA-Box annotation
| Distance to TSS: | -1274 |
|---|---|
| Nearest PromoterID: | NM_001257180 |
| Entrez ID: | 6575 |
| Nearest Unigene: | Hs.653173 |
| Nearest Refseq: | NM_006749 |
| Nearest Ensembl: | ENSG00000168575 |
| Gene Name: | solute carrier family 20 member 2 |
| Gene Alias: | GLVR-2|GLVR2|IBGC1|IBGC3|MLVAR|PIT-2|PIT2|RAM1|Ram-1 |
| Gene Description: | solute carrier family 20 member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.517413 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 88(GGCTTTTTAAGC,-,0.00) |
