Difference between revisions of "TSS:Hg 92989.1"
From referenceTSS
| Line 6: | Line 6: | ||
|IMD26= | |IMD26= | ||
|XRCC7= | |XRCC7= | ||
| − | |all_trans=ENST00000541488 | + | |all_trans=ENST00000541488.1:0 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=30980 |
|end=47929181 | |end=47929181 | ||
|end_of_center_position=47929157 | |end_of_center_position=47929157 | ||
|entrez_id=5591 | |entrez_id=5591 | ||
|gc_percent=0.368159 | |gc_percent=0.368159 | ||
| − | |gene_alias=DNA-PKcs | + | |gene_alias=DNA-PKC{{!}}DNA-PKcs{{!}}DNAPK{{!}}DNAPKc{{!}}DNPK1{{!}}HYRC{{!}}HYRC1{{!}}IMD26{{!}}XRCC7{{!}}p350 |
| − | |gene_description= | + | |gene_description=protein kinase, DNA-activated, catalytic subunit |
|gene_id=5591 | |gene_id=5591 | ||
| − | |gene_name= | + | |gene_name=protein kinase, DNA-activated, catalytic subunit |
|gene_source=HGNC:9413 | |gene_source=HGNC:9413 | ||
|gene_symbol=PRKDC | |gene_symbol=PRKDC | ||
| − | |gene_synonyms=DNA-PKcs DNAPK DNPK1 XRCC7 p350 | + | |gene_synonyms=DNA-PKC DNA-PKcs DNAPK DNAPKc DNPK1 XRCC7 p350 p460 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:9413 | |hgnc_mgi_id=HGNC:9413 | ||
|nearest_ensembl=ENSG00000253729 | |nearest_ensembl=ENSG00000253729 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001081640 |
|nearest_refseq=NM_006904 | |nearest_refseq=NM_006904 | ||
|nearest_unigene=Hs.491682 | |nearest_unigene=Hs.491682 | ||
| − | |num_trans= | + | |num_trans=1 |
|p350= | |p350= | ||
|species=human | |species=human | ||
| Line 34: | Line 34: | ||
|start_of_center_position=47929156 | |start_of_center_position=47929156 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000541488 | + | |transcript_name=ENST00000541488.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_92989.1 | |tss_id=hg_92989.1 | ||
Revision as of 19:33, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 47929156 |
|---|---|
| End of the center position in the TSS region: | 47929157 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000541488.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 1 |
| All_trans: | ENST00000541488.1:0 |
TATA-Box annotation
| Distance to TSS: | 30980 |
|---|---|
| Nearest PromoterID: | NM_001081640 |
| Entrez ID: | 5591 |
| Nearest Unigene: | Hs.491682 |
| Nearest Refseq: | NM_006904 |
| Nearest Ensembl: | ENSG00000253729 |
| Gene Name: | protein kinase, DNA-activated, catalytic subunit |
| Gene Alias: | DNA-PKC|DNA-PKcs|DNAPK|DNAPKc|DNPK1|HYRC|HYRC1|IMD26|XRCC7|p350 |
| Gene Description: | protein kinase, DNA-activated, catalytic subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.368159 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
