Difference between revisions of "TSS:Hg 88780.1"
From referenceTSS
| Line 4: | Line 4: | ||
|NKGCD= | |NKGCD= | ||
|P1-CDC21= | |P1-CDC21= | ||
| − | |all_trans= | + | |all_trans=ENST00000648407.1:0 ENST00000649838.1:0 ENST00000649919.1:0 AK309812:0 ENST00000262105.6:21 ENST00000649973.1:26 NM_005914:26 NM_182746:26 ENST00000520994.1:34 ENST00000648519.1:37 AK296913:42 ENST00000524086.5:43 AK022899:59 X74794:105 BC031061:132 ENST00000650216.1:223 AB590735:230 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.14 | |cpg_percent=0.14 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-37 |
|end=47960915 | |end=47960915 | ||
|end_of_center_position=47960905 | |end_of_center_position=47960905 | ||
|entrez_id=4173 | |entrez_id=4173 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
| − | |gene_alias=CDC21 | + | |gene_alias=CDC21{{!}}CDC54{{!}}IMD54{{!}}NKCD{{!}}NKGCD{{!}}P1-CDC21{{!}}hCdc21 |
|gene_description=minichromosome maintenance complex component 4 | |gene_description=minichromosome maintenance complex component 4 | ||
|gene_id=4173 | |gene_id=4173 | ||
| Line 24: | Line 24: | ||
|hgnc_mgi_id=HGNC:6947 | |hgnc_mgi_id=HGNC:6947 | ||
|nearest_ensembl=ENSG00000104738 | |nearest_ensembl=ENSG00000104738 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_182746 |
|nearest_refseq=NM_005914 | |nearest_refseq=NM_005914 | ||
|nearest_unigene=Hs.460184 | |nearest_unigene=Hs.460184 | ||
| − | |num_trans= | + | |num_trans=17 |
|species=human | |species=human | ||
|start=47960893 | |start=47960893 | ||
|start_of_center_position=47960904 | |start_of_center_position=47960904 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000648407.1 ENST00000649838.1 ENST00000649919.1 AK309812 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_88780.1 | |tss_id=hg_88780.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A3B3IT92 A0A3B3ITP6 A0A3B3IU45 |
}} | }} | ||
Revision as of 17:55, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 47960904 |
|---|---|
| End of the center position in the TSS region: | 47960905 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000648407.1 ENST00000649838.1 ENST00000649919.1 AK309812 |
|---|---|
| Distance: | 0 |
| Num_trans: | 17 |
| All_trans: | ENST00000648407.1:0 ENST00000649838.1:0 ENST00000649919.1:0 AK309812:0 ENST00000262105.6:21 ENST00000649973.1:26 NM_005914:26 NM_182746:26 ENST00000520994.1:34 ENST00000648519.1:37 AK296913:42 ENST00000524086.5:43 AK022899:59 X74794:105 BC031061:132 ENST00000650216.1:223 AB590735:230 |
TATA-Box annotation
| Distance to TSS: | -37 |
|---|---|
| Nearest PromoterID: | NM_182746 |
| Entrez ID: | 4173 |
| Nearest Unigene: | Hs.460184 |
| Nearest Refseq: | NM_005914 |
| Nearest Ensembl: | ENSG00000104738 |
| Gene Name: | minichromosome maintenance complex component 4 |
| Gene Alias: | CDC21|CDC54|IMD54|NKCD|NKGCD|P1-CDC21|hCdc21 |
| Gene Description: | minichromosome maintenance complex component 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.14 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
