Difference between revisions of "TSS:Hg 10626.1"
From referenceTSS
| Line 2: | Line 2: | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| − | |distance= | + | |distance=NA |
| − | |distance_to_tss=- | + | |distance_to_tss=-54463 |
|end=19011141 | |end=19011141 | ||
|end_of_center_position=19011139 | |end_of_center_position=19011139 | ||
| Line 21: | Line 21: | ||
|start_of_center_position=19011138 | |start_of_center_position=19011138 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-33(CACTTTATAAGG,-,0.00),-31(CTTTATAAGGAC,+,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 18:33, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 19011138 |
|---|---|
| End of the center position in the TSS region: | 19011139 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -54463 |
|---|---|
| Nearest PromoterID: | NM_001136265 |
| Entrez ID: | 126917 |
| Nearest Unigene: | Hs.466625 |
| Nearest Refseq: | NM_001136265 |
| Nearest Ensembl: | ENSG00000169991 |
| Gene Name: | IFFO2 |
| Gene Alias: | - |
| Gene Description: | intermediate filament family orphan 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.557214 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(CACTTTATAAGG,-,0.00),-31(CTTTATAAGGAC,+,0.00) |
