Difference between revisions of "TSS:Hg 1061.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000400548.6:-8 | + | |all_trans=ENST00000400548.6:-8 BC015324:-8 LF357166:-14 MA592743:-14 ENST00000469076.5:-19 AK172745:-19 AK125580:-21 AK130171:-21 ENST00000375155.7:-23 ENST00000375153.8:-23 NM_001287531:-23 NM_001040125:-23 NM_017765:-23 NM_001040126:-23 NR_109848:-23 AK130175:-23 AK000327:-23 LF206691:-179 MA442268:-179 ENST00000497827.1:378 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance=-8 | |distance=-8 | ||
| − | |distance_to_tss= | + | |distance_to_tss=24 |
|end=19312351 | |end=19312351 | ||
|end_of_center_position=19312350 | |end_of_center_position=19312350 | ||
|entrez_id=54896 | |entrez_id=54896 | ||
|gc_percent=0.756219 | |gc_percent=0.756219 | ||
| − | |gene_alias=- | + | |gene_alias=LAAT-1{{!}}LAAT1{{!}}PQLC2 |
| − | |gene_description= | + | |gene_description=solute carrier family 66 member 1 |
|gene_id=54896 | |gene_id=54896 | ||
| − | |gene_name= | + | |gene_name=solute carrier family 66 member 1 |
|gene_source=HGNC:26001 | |gene_source=HGNC:26001 | ||
| − | |gene_symbol= | + | |gene_symbol=SLC66A1 |
| − | |gene_synonyms=FLJ20320 | + | |gene_synonyms=FLJ20320 LAAT-1 LAAT1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:26001 | |hgnc_mgi_id=HGNC:26001 | ||
|nearest_ensembl=ENSG00000040487 | |nearest_ensembl=ENSG00000040487 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_109848 |
|nearest_refseq=NM_017765 | |nearest_refseq=NM_017765 | ||
|nearest_unigene=Hs.647620 | |nearest_unigene=Hs.647620 | ||
| − | |num_trans= | + | |num_trans=20 |
|species=human | |species=human | ||
|start=19312348 | |start=19312348 | ||
|start_of_center_position=19312349 | |start_of_center_position=19312349 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000400548.6 | + | |transcript_name=ENST00000400548.6 BC015324 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_1061.1 | |tss_id=hg_1061.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A0A024RAA1 | + | |uniprot_id=A0A024RAA1 |
}} | }} | ||
Revision as of 18:29, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 19312349 |
|---|---|
| End of the center position in the TSS region: | 19312350 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000400548.6 BC015324 |
|---|---|
| Distance: | -8 |
| Num_trans: | 20 |
| All_trans: | ENST00000400548.6:-8 BC015324:-8 LF357166:-14 MA592743:-14 ENST00000469076.5:-19 AK172745:-19 AK125580:-21 AK130171:-21 ENST00000375155.7:-23 ENST00000375153.8:-23 NM_001287531:-23 NM_001040125:-23 NM_017765:-23 NM_001040126:-23 NR_109848:-23 AK130175:-23 AK000327:-23 LF206691:-179 MA442268:-179 ENST00000497827.1:378 |
TATA-Box annotation
| Distance to TSS: | 24 |
|---|---|
| Nearest PromoterID: | NR_109848 |
| Entrez ID: | 54896 |
| Nearest Unigene: | Hs.647620 |
| Nearest Refseq: | NM_017765 |
| Nearest Ensembl: | ENSG00000040487 |
| Gene Name: | solute carrier family 66 member 1 |
| Gene Alias: | LAAT-1|LAAT1|PQLC2 |
| Gene Description: | solute carrier family 66 member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.756219 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
