Difference between revisions of "TSS:Hg 89121.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000665390.1:449 ENST00000521441.2:479 ENST00000671254.1:490 | ||
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=449 |
|distance_to_tss=-525 | |distance_to_tss=-525 | ||
|end=64372702 | |end=64372702 | ||
| Line 10: | Line 11: | ||
|gene_alias=LINC00966 | |gene_alias=LINC00966 | ||
|gene_description=MIR124-2 host gene | |gene_description=MIR124-2 host gene | ||
| − | |gene_name=MIR124-2HG | + | |gene_id=100130155 |
| + | |gene_name=MIR124-2 host gene | ||
| + | |gene_source=HGNC:48723 | ||
| + | |gene_symbol=MIR124-2HG | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:48723 | ||
|nearest_ensembl=ENSG00000254377 | |nearest_ensembl=ENSG00000254377 | ||
|nearest_promoter_id=NR_034102 | |nearest_promoter_id=NR_034102 | ||
|nearest_refseq=NR_034102 | |nearest_refseq=NR_034102 | ||
|nearest_unigene=Hs.7023 | |nearest_unigene=Hs.7023 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=64372684 | |start=64372684 | ||
|start_of_center_position=64372693 | |start_of_center_position=64372693 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-25(CCCCATAAAAGA,-,0.00),27(CCATTTTAAAGC,-,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000665390.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_89121.1 | |tss_id=hg_89121.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 18:03, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 64372693 |
|---|---|
| End of the center position in the TSS region: | 64372694 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000665390.1 |
|---|---|
| Distance: | 449 |
| Num_trans: | 3 |
| All_trans: | ENST00000665390.1:449 ENST00000521441.2:479 ENST00000671254.1:490 |
TATA-Box annotation
| Distance to TSS: | -525 |
|---|---|
| Nearest PromoterID: | NR_034102 |
| Entrez ID: | 100130155 |
| Nearest Unigene: | Hs.7023 |
| Nearest Refseq: | NR_034102 |
| Nearest Ensembl: | ENSG00000254377 |
| Gene Name: | MIR124-2 host gene |
| Gene Alias: | LINC00966 |
| Gene Description: | MIR124-2 host gene |
| Gene Type: | ncRNA |
| CpG%: | 0.015 |
| GC%: | 0.402985 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -25(CCCCATAAAAGA,-,0.00),27(CCATTTTAAAGC,-,0.00) |
