Difference between revisions of "TSS:Hg 106078.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=-255 |entrez_id=57559 |gc_percent=0.447761 |gene_alias=ALMalpha|AMSH-FP|AMSH-LP|bA399O19.2 |gene_description=STAM binding prote...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |AMSH-FP= | ||
| + | |AMSH-LP= | ||
| + | |all_trans=AB037794:-62 ENST00000371926.7:-194 ENST00000371927.7:-194 uc001kfk.5:-194 uc010qmx.3:-194 NM_020799:251 ENST00000461650.1:288 uc057usz.1:288 AK056086:322 BC010846:333 | ||
| + | |bA399O19.2= | ||
| + | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance=-62 | ||
|distance_to_tss=-255 | |distance_to_tss=-255 | ||
| + | |end=88879936 | ||
|entrez_id=57559 | |entrez_id=57559 | ||
|gc_percent=0.447761 | |gc_percent=0.447761 | ||
|gene_alias=ALMalpha|AMSH-FP|AMSH-LP|bA399O19.2 | |gene_alias=ALMalpha|AMSH-FP|AMSH-LP|bA399O19.2 | ||
|gene_description=STAM binding protein like 1 | |gene_description=STAM binding protein like 1 | ||
| − | |gene_name=STAMBPL1 | + | |gene_id=57559 |
| + | |gene_name=STAM binding protein like 1 | ||
| + | |gene_source=HGNC:24105 | ||
| + | |gene_symbol=STAMBPL1 | ||
| + | |gene_synonyms=ALMalpha AMSH-FP AMSH-LP FLJ31524 KIAA1373 bA399O19.2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:24105 | ||
|nearest_ensembl=ENSG00000138134 | |nearest_ensembl=ENSG00000138134 | ||
|nearest_promoter_id=NM_020799 | |nearest_promoter_id=NM_020799 | ||
|nearest_refseq=NM_020799 | |nearest_refseq=NM_020799 | ||
|nearest_unigene=Hs.16229 | |nearest_unigene=Hs.16229 | ||
| + | |num_trans=10 | ||
| + | |species=human | ||
| + | |start=88879927 | ||
| + | |strand=+ | ||
|tata_box="27(AGTCTTAAAAGG,-,0.00),28(GTCTTAAAAGGC,+,0.00)" | |tata_box="27(AGTCTTAAAAGG,-,0.00),28(GTCTTAAAAGGC,+,0.00)" | ||
| + | |transcript_name=AB037794 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106078.1 | |tss_id=hg_106078.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 22:03, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AB037794 |
|---|---|
| Distance: | -62 |
| Num_trans: | 10 |
| All_trans: | AB037794:-62 ENST00000371926.7:-194 ENST00000371927.7:-194 uc001kfk.5:-194 uc010qmx.3:-194 NM_020799:251 ENST00000461650.1:288 uc057usz.1:288 AK056086:322 BC010846:333 |
TATA-Box annotation
| Distance to TSS: | -255 |
|---|---|
| Nearest PromoterID: | NM_020799 |
| Entrez ID: | 57559 |
| Nearest Unigene: | Hs.16229 |
| Nearest Refseq: | NM_020799 |
| Nearest Ensembl: | ENSG00000138134 |
| Gene Name: | STAM binding protein like 1 |
| Gene Alias: | ALMalpha |
| Gene Description: | STAM binding protein like 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.447761 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "27(AGTCTTAAAAGG,-,0.00),28(GTCTTAAAAGGC,+,0.00)" |
