Difference between revisions of "TSS:Mm 1821.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000141994.1:0 NM_007734 | + | |all_trans=ENSMUST00000141994.1:0 NM_007734:0 AK086939:0 ENSMUST00000113457.8:38 AF169387:38 |
|alpha3(IV)= | |alpha3(IV)= | ||
|chr=chr1 | |chr=chr1 | ||
| Line 10: | Line 10: | ||
|entrez_id=12828 | |entrez_id=12828 | ||
|gc_percent=0.641791 | |gc_percent=0.641791 | ||
| − | |gene_alias=[a]3(IV) | + | |gene_alias=[a]3(IV){{!}}alpha3(IV) |
| − | |gene_description= | + | |gene_description=collagen, type IV, alpha 3 |
|gene_id=12828 | |gene_id=12828 | ||
| − | |gene_name= | + | |gene_name=collagen, type IV, alpha 3 |
|gene_source=MGI:104688 | |gene_source=MGI:104688 | ||
|gene_symbol=Col4a3 | |gene_symbol=Col4a3 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_007734 | |nearest_refseq=NM_007734 | ||
|nearest_unigene=Mm.389135 | |nearest_unigene=Mm.389135 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=mouse | |species=mouse | ||
|start=82586909 | |start=82586909 | ||
|start_of_center_position=82586923 | |start_of_center_position=82586923 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000141994.1 NM_007734 | + | |transcript_name=ENSMUST00000141994.1 NM_007734 AK086939 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_1821.1 | |tss_id=mm_1821.1 | ||
Revision as of 20:51, 20 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 82586923 |
|---|---|
| End of the center position in the TSS region: | 82586924 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000141994.1 NM_007734 AK086939 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5 |
| All_trans: | ENSMUST00000141994.1:0 NM_007734:0 AK086939:0 ENSMUST00000113457.8:38 AF169387:38 |
TATA-Box annotation
| Distance to TSS: | 3 |
|---|---|
| Nearest PromoterID: | NM_007734 |
| Entrez ID: | 12828 |
| Nearest Unigene: | Mm.389135 |
| Nearest Refseq: | NM_007734 |
| Nearest Ensembl: | ENSMUSG00000079465 |
| Gene Name: | collagen, type IV, alpha 3 |
| Gene Alias: | [a]3(IV)|alpha3(IV) |
| Gene Description: | collagen, type IV, alpha 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
