Difference between revisions of "TSS:Hg 180646.1"
From referenceTSS
| Line 2: | Line 2: | ||
|CLIPR59= | |CLIPR59= | ||
|RSNL1= | |RSNL1= | ||
| − | |all_trans=AK289509:0 AK090732:-10 ENST00000593074.5:-25 | + | |all_trans=NM_001199570:0 AK289509:0 AK090732:-10 ENST00000593074.5:-25 AK294748:-122 BC013116:-161 LF207597:-193 MA443174:-193 ENST00000592017.5:-225 ENST00000360535.9:-227 NM_015526:-227 AJ427922:-227 AK092354:-228 ENST00000586457.1:-240 AK094738:-247 KJ893505:270 CU680510:270 LF367338:340 MA602915:340 |
|chr=chr19 | |chr=chr19 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-2 |
|end=36032646 | |end=36032646 | ||
|end_of_center_position=36032637 | |end_of_center_position=36032637 | ||
|entrez_id=25999 | |entrez_id=25999 | ||
|gc_percent=0.696517 | |gc_percent=0.696517 | ||
| − | |gene_alias=CLIPR-59 | + | |gene_alias=CLIPR-59{{!}}CLIPR59{{!}}RSNL1 |
|gene_description=CAP-Gly domain containing linker protein 3 | |gene_description=CAP-Gly domain containing linker protein 3 | ||
|gene_id=25999 | |gene_id=25999 | ||
| Line 29: | Line 29: | ||
|start_of_center_position=36032636 | |start_of_center_position=36032636 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=AK289509 | + | |transcript_name=NM_001199570 AK289509 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_180646.1 | |tss_id=hg_180646.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q96DZ5 |
}} | }} | ||
Revision as of 23:13, 16 June 2021
Basic information about the TSS
|
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| Start of the center position in the TSS region: | 36032636 |
|---|---|
| End of the center position in the TSS region: | 36032637 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001199570 AK289509 |
|---|---|
| Distance: | 0 |
| Num_trans: | 19 |
| All_trans: | NM_001199570:0 AK289509:0 AK090732:-10 ENST00000593074.5:-25 AK294748:-122 BC013116:-161 LF207597:-193 MA443174:-193 ENST00000592017.5:-225 ENST00000360535.9:-227 NM_015526:-227 AJ427922:-227 AK092354:-228 ENST00000586457.1:-240 AK094738:-247 KJ893505:270 CU680510:270 LF367338:340 MA602915:340 |
TATA-Box annotation
| Distance to TSS: | -2 |
|---|---|
| Nearest PromoterID: | NM_001199570 |
| Entrez ID: | 25999 |
| Nearest Unigene: | Hs.466539 |
| Nearest Refseq: | NM_015526 |
| Nearest Ensembl: | ENSG00000105270 |
| Gene Name: | CAP-Gly domain containing linker protein 3 |
| Gene Alias: | CLIPR-59|CLIPR59|RSNL1 |
| Gene Description: | CAP-Gly domain containing linker protein 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
