Difference between revisions of "TSS:Hg 243012.1"
From referenceTSS
| Line 5: | Line 5: | ||
|T1= | |T1= | ||
|TRS120= | |TRS120= | ||
| − | |all_trans= | + | |all_trans=ENST00000522940.5:1 ENST00000520271.5:2 X13238:-36 ENST00000523016.1:-54 ENST00000517682.6:-55 ENST00000297564.6:-58 ENST00000518171.5:-71 ENST00000522934.5:-80 AK311791:-80 ENST00000520517.5:-81 ENST00000520468.7:-81 NM_004374:-81 ENST00000524245.5:489 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| − | |distance= | + | |distance=1 |
|distance_to_tss=44 | |distance_to_tss=44 | ||
|end=140458535 | |end=140458535 | ||
| Line 14: | Line 14: | ||
|entrez_id=83696 | |entrez_id=83696 | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
| − | |gene_alias=IBP | + | |gene_alias=IBP{{!}}IKBKBBP{{!}}MRT13{{!}}NIBP{{!}}T1{{!}}TRS120 |
|gene_description=trafficking protein particle complex 9 | |gene_description=trafficking protein particle complex 9 | ||
| − | |gene_id= | + | |gene_id=1345 |
| − | |gene_name= | + | |gene_name=cytochrome c oxidase subunit 6C |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:2285 |
| − | |gene_symbol= | + | |gene_symbol=COX6C |
| − | |gene_synonyms= | + | |gene_synonyms= |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:2285 |
|nearest_ensembl=ENSG00000167632 | |nearest_ensembl=ENSG00000167632 | ||
|nearest_promoter_id=NM_031466 | |nearest_promoter_id=NM_031466 | ||
|nearest_refseq=NM_031466 | |nearest_refseq=NM_031466 | ||
|nearest_unigene=Hs.654911 | |nearest_unigene=Hs.654911 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=human | |species=human | ||
|start=140458534 | |start=140458534 | ||
|start_of_center_position=99893624 | |start_of_center_position=99893624 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-75(CCTTTTATGTGG,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000522940.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_243012.1 | |tss_id=hg_243012.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A024R9B7 |
}} | }} | ||
Revision as of 16:29, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 99893624 |
|---|---|
| End of the center position in the TSS region: | 99893625 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000522940.5 |
|---|---|
| Distance: | 1 |
| Num_trans: | 13 |
| All_trans: | ENST00000522940.5:1 ENST00000520271.5:2 X13238:-36 ENST00000523016.1:-54 ENST00000517682.6:-55 ENST00000297564.6:-58 ENST00000518171.5:-71 ENST00000522934.5:-80 AK311791:-80 ENST00000520517.5:-81 ENST00000520468.7:-81 NM_004374:-81 ENST00000524245.5:489 |
TATA-Box annotation
| Distance to TSS: | 44 |
|---|---|
| Nearest PromoterID: | NM_031466 |
| Entrez ID: | 83696 |
| Nearest Unigene: | Hs.654911 |
| Nearest Refseq: | NM_031466 |
| Nearest Ensembl: | ENSG00000167632 |
| Gene Name: | cytochrome c oxidase subunit 6C |
| Gene Alias: | IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 |
| Gene Description: | trafficking protein particle complex 9 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -75(CCTTTTATGTGG,+,0.00) |
