Difference between revisions of "TSS:Hg 10615.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.12 |distance_to_tss=218 |entrez_id=8659 |gc_percent=0.681592 |gene_alias=ALDH4|P5CD|P5CDh |gene_description=aldehyde dehydrogenase 4 family member A...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |P5CD= | ||
| + | |P5CDh= | ||
| + | |all_trans=ENST00000290597.9:20 uc001bbb.4:20 U24266:20 U24267:20 AK222486:20 BC023600:33 BC007581:44 ENST00000538839.5:45 uc021ohl.2:45 FJ462711:45 KR710110:50 KJ897887:50 DQ893505:50 DQ896489:50 AB587364:50 ENST00000432718.1:-134 uc057cvc.1:-134 AK289972:-134 ENST00000375341.7:-191 uc001bbc.4:-191 NM_003748:-209 NM_170726:-209 NM_001319218:-209 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| + | |distance=20 | ||
|distance_to_tss=218 | |distance_to_tss=218 | ||
| + | |end=18902590 | ||
|entrez_id=8659 | |entrez_id=8659 | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
|gene_alias=ALDH4|P5CD|P5CDh | |gene_alias=ALDH4|P5CD|P5CDh | ||
|gene_description=aldehyde dehydrogenase 4 family member A1 | |gene_description=aldehyde dehydrogenase 4 family member A1 | ||
| − | |gene_name=ALDH4A1 | + | |gene_id=8659 |
| + | |gene_name=aldehyde dehydrogenase 4 family member A1 | ||
| + | |gene_source=HGNC:406 | ||
| + | |gene_symbol=ALDH4A1 | ||
| + | |gene_synonyms=P5CDh | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:406 | ||
|nearest_ensembl=ENSG00000159423 | |nearest_ensembl=ENSG00000159423 | ||
|nearest_promoter_id=NM_170726 | |nearest_promoter_id=NM_170726 | ||
|nearest_refseq=NM_003748 | |nearest_refseq=NM_003748 | ||
|nearest_unigene=Hs.77448 | |nearest_unigene=Hs.77448 | ||
| + | |num_trans=23 | ||
| + | |species=human | ||
| + | |start=18902572 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000290597.9 uc001bbb.4 U24266 U24267 AK222486 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10615.1 | |tss_id=hg_10615.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A024RAD8 P30038 | ||
}} | }} | ||
Revision as of 22:06, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000290597.9 uc001bbb.4 U24266 U24267 AK222486 |
|---|---|
| Distance: | 20 |
| Num_trans: | 23 |
| All_trans: | ENST00000290597.9:20 uc001bbb.4:20 U24266:20 U24267:20 AK222486:20 BC023600:33 BC007581:44 ENST00000538839.5:45 uc021ohl.2:45 FJ462711:45 KR710110:50 KJ897887:50 DQ893505:50 DQ896489:50 AB587364:50 ENST00000432718.1:-134 uc057cvc.1:-134 AK289972:-134 ENST00000375341.7:-191 uc001bbc.4:-191 NM_003748:-209 NM_170726:-209 NM_001319218:-209 |
TATA-Box annotation
| Distance to TSS: | 218 |
|---|---|
| Nearest PromoterID: | NM_170726 |
| Entrez ID: | 8659 |
| Nearest Unigene: | Hs.77448 |
| Nearest Refseq: | NM_003748 |
| Nearest Ensembl: | ENSG00000159423 |
| Gene Name: | aldehyde dehydrogenase 4 family member A1 |
| Gene Alias: | ALDH4 |
| Gene Description: | aldehyde dehydrogenase 4 family member A1 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
