Difference between revisions of "TSS:Hg 106175.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=-21293 |entrez_id=101926924 |gc_percent=0.472637 |gene_alias=- |gene_description=long intergenic non-protein coding RNA 1375 |ge...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000489253.1:41 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| + | |distance=41 | ||
|distance_to_tss=-21293 | |distance_to_tss=-21293 | ||
| + | |end=89978676 | ||
|entrez_id=101926924 | |entrez_id=101926924 | ||
|gc_percent=0.472637 | |gc_percent=0.472637 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=long intergenic non-protein coding RNA 1375 | |gene_description=long intergenic non-protein coding RNA 1375 | ||
| − | |gene_name= | + | |gene_id= |
| + | |gene_name=small nuclear ribonucleoprotein D2 pseudogene 1 | ||
| + | |gene_source=HGNC:31459 | ||
| + | |gene_symbol=SNRPD2P1 | ||
| + | |gene_synonyms=bA478K7.1 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:31459 | ||
|nearest_ensembl=ENSG00000226159 | |nearest_ensembl=ENSG00000226159 | ||
|nearest_promoter_id=NR_110655 | |nearest_promoter_id=NR_110655 | ||
|nearest_refseq=NR_110655 | |nearest_refseq=NR_110655 | ||
|nearest_unigene=Hs.500498 | |nearest_unigene=Hs.500498 | ||
| + | |num_trans=1 | ||
| + | |species=human | ||
| + | |start=89978655 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000489253.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106175.1 | |tss_id=hg_106175.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 22:07, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000489253.1 |
|---|---|
| Distance: | 41 |
| Num_trans: | 1 |
| All_trans: | ENST00000489253.1:41 |
TATA-Box annotation
| Distance to TSS: | -21293 |
|---|---|
| Nearest PromoterID: | NR_110655 |
| Entrez ID: | 101926924 |
| Nearest Unigene: | Hs.500498 |
| Nearest Refseq: | NR_110655 |
| Nearest Ensembl: | ENSG00000226159 |
| Gene Name: | small nuclear ribonucleoprotein D2 pseudogene 1 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 1375 |
| Gene Type: | ncRNA |
| CpG%: | 0.03 |
| GC%: | 0.472637 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
