Difference between revisions of "TSS:Hg 237732.1"
From referenceTSS
| Line 2: | Line 2: | ||
|SNRPD1= | |SNRPD1= | ||
|Sm-D2= | |Sm-D2= | ||
| − | |all_trans= | + | |all_trans=NM_001098612:6 ENST00000360844.6:24 AK298284:24 ENST00000599649.5:25 AY854038:25 ENST00000429354.3:-64 AY358369:70 |
|chr=chr19 | |chr=chr19 | ||
|cpg_percent=0.075 | |cpg_percent=0.075 | ||
| − | |distance= | + | |distance=6 |
|distance_to_tss=76 | |distance_to_tss=76 | ||
|end=45692240 | |end=45692240 | ||
| Line 11: | Line 11: | ||
|entrez_id=6633 | |entrez_id=6633 | ||
|gc_percent=0.547264 | |gc_percent=0.547264 | ||
| − | |gene_alias=SMD2 | + | |gene_alias=SMD2{{!}}SNRPD1{{!}}Sm-D2 |
|gene_description=small nuclear ribonucleoprotein D2 polypeptide | |gene_description=small nuclear ribonucleoprotein D2 polypeptide | ||
| − | |gene_id= | + | |gene_id=100049587 |
| − | |gene_name= | + | |gene_name=sialic acid binding Ig like lectin 14 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:32926 |
| − | |gene_symbol= | + | |gene_symbol=SIGLEC14 |
| − | |gene_synonyms= | + | |gene_synonyms= |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:32926 |
|nearest_ensembl=ENSG00000125743 | |nearest_ensembl=ENSG00000125743 | ||
|nearest_promoter_id=NM_004597 | |nearest_promoter_id=NM_004597 | ||
|nearest_refseq=NM_004597 | |nearest_refseq=NM_004597 | ||
|nearest_unigene=Hs.515472 | |nearest_unigene=Hs.515472 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=45692239 | |start=45692239 | ||
|start_of_center_position=51646824 | |start_of_center_position=51646824 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=NM_001098612 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_237732.1 | |tss_id=hg_237732.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q08ET2 |
}} | }} | ||
Revision as of 14:26, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 51646824 |
|---|---|
| End of the center position in the TSS region: | 51646825 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001098612 |
|---|---|
| Distance: | 6 |
| Num_trans: | 7 |
| All_trans: | NM_001098612:6 ENST00000360844.6:24 AK298284:24 ENST00000599649.5:25 AY854038:25 ENST00000429354.3:-64 AY358369:70 |
TATA-Box annotation
| Distance to TSS: | 76 |
|---|---|
| Nearest PromoterID: | NM_004597 |
| Entrez ID: | 6633 |
| Nearest Unigene: | Hs.515472 |
| Nearest Refseq: | NM_004597 |
| Nearest Ensembl: | ENSG00000125743 |
| Gene Name: | sialic acid binding Ig like lectin 14 |
| Gene Alias: | SMD2|SNRPD1|Sm-D2 |
| Gene Description: | small nuclear ribonucleoprotein D2 polypeptide |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.547264 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
