Difference between revisions of "TSS:Hg 242698.1"
From referenceTSS
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|CYPH= | |CYPH= | ||
|HEL-S-69p= | |HEL-S-69p= | ||
| − | |all_trans= | + | |all_trans=AF240677:-63 D63481:-65 AB383767:-66 BC146321:-67 ENST00000320476.7:-70 ENST00000674084.1:-70 AY062238:-70 ENST00000377533.7:341 AF271734:341 LF214026:-420 MA449603:-420 ENST00000356994.7:-464 NM_015356:-464 NM_182706:-464 LF210317:-478 MA445894:-478 |
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| − | |distance=- | + | |distance=-63 |
| − | |distance_to_tss= | + | |distance_to_tss=-32 |
|end=44796652 | |end=44796652 | ||
|end_of_center_position=143815309 | |end_of_center_position=143815309 | ||
|entrez_id=5478 | |entrez_id=5478 | ||
|gc_percent=0.626866 | |gc_percent=0.626866 | ||
| − | |gene_alias=CYPA | + | |gene_alias=CYPA{{!}}CYPH{{!}}HEL-S-69p |
|gene_description=peptidylprolyl isomerase A | |gene_description=peptidylprolyl isomerase A | ||
| − | |gene_id= | + | |gene_id=23513 |
| − | |gene_name= | + | |gene_name=scribble planar cell polarity protein |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:30377 |
| − | |gene_symbol= | + | |gene_symbol=SCRIB |
| − | |gene_synonyms= | + | |gene_synonyms=KIAA0147 SCRB1 Vartul |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:30377 |
|nearest_ensembl=ENSG00000196262 | |nearest_ensembl=ENSG00000196262 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_021130 |
|nearest_refseq=NM_021130 | |nearest_refseq=NM_021130 | ||
|nearest_unigene=Hs.356331 | |nearest_unigene=Hs.356331 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=44796645 | |start=44796645 | ||
|start_of_center_position=143815308 | |start_of_center_position=143815308 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-2(TGGTATAAAAGG,-,0.00) |
| − | |transcript_name= | + | |transcript_name=AF240677 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_242698.1 | |tss_id=hg_242698.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 16:21, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 143815308 |
|---|---|
| End of the center position in the TSS region: | 143815309 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AF240677 |
|---|---|
| Distance: | -63 |
| Num_trans: | 16 |
| All_trans: | AF240677:-63 D63481:-65 AB383767:-66 BC146321:-67 ENST00000320476.7:-70 ENST00000674084.1:-70 AY062238:-70 ENST00000377533.7:341 AF271734:341 LF214026:-420 MA449603:-420 ENST00000356994.7:-464 NM_015356:-464 NM_182706:-464 LF210317:-478 MA445894:-478 |
TATA-Box annotation
| Distance to TSS: | -32 |
|---|---|
| Nearest PromoterID: | NM_021130 |
| Entrez ID: | 5478 |
| Nearest Unigene: | Hs.356331 |
| Nearest Refseq: | NM_021130 |
| Nearest Ensembl: | ENSG00000196262 |
| Gene Name: | scribble planar cell polarity protein |
| Gene Alias: | CYPA|CYPH|HEL-S-69p |
| Gene Description: | peptidylprolyl isomerase A |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -2(TGGTATAAAAGG,-,0.00) |
