Difference between revisions of "TSS:Hg 95721.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=BC012197:9 BC013104:-15 BC000077:-18 ENST00000532702.1:-21 ENST00000394920.6:-26 ENST00000529163.5:-27 ENST00000528957.6:-27 NM_001317782:-27 NM_000973:-27 NM_001317771:-27 NM_033301:-27 AK301073:-27 D28421:-27 AK289459:-33 ENST00000531767.1:-57 BC093064:-57 ENST00000525232.5:-58 AK309619:-58 ENST00000527914.5:-60 ENST00000533397.5:200 ENST00000529920.5:210 BC007935:210 BC030151:210 AB590228:219 DQ893309:222 EU176553:222 CU674022:223 ENST00000262584.7:-224 BT007379:224 CR457046:224 ENST00000528296.5:228 ENST00000531975.5:296 LP997127:362 LY480927:362 LY495824:362 LY496511:362 LY497149:362 LY499157:362 LY500367:362 LZ238771:362 MP073629:362 MP080402:362 MS868989:362 MS880472:362 MS884336:362 MS885486:362 MS994519:362 MA822648:362 LY616535:362 MB473037:362 LP951752:362 LQ724883:362 LY480804:362 LY495674:362 LY496301:362 LY496956:362 LY498887:362 LY500359:362 LZ238512:362 MS868839:362 MS880202:362 MS884143:362 MS885478:362 MS994309:362 MA822312:362 LY616276:362 MB472806:362 ENST00000526668.5:394 BC000047:437 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| − | |distance= | + | |distance=9 |
| − | |distance_to_tss= | + | |distance_to_tss=32 |
|end=144792363 | |end=144792363 | ||
|end_of_center_position=144792358 | |end_of_center_position=144792358 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:10368 | |hgnc_mgi_id=HGNC:10368 | ||
|nearest_ensembl=ENSG00000161016 | |nearest_ensembl=ENSG00000161016 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_000973 |
|nearest_refseq=NM_000973 | |nearest_refseq=NM_000973 | ||
|nearest_unigene=Hs.178551 | |nearest_unigene=Hs.178551 | ||
| − | |num_trans= | + | |num_trans=69 |
|species=human | |species=human | ||
|start=144792352 | |start=144792352 | ||
|start_of_center_position=144792357 | |start_of_center_position=144792357 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=BC012197 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_95721.1 | |tss_id=hg_95721.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 20:37, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 144792357 |
|---|---|
| End of the center position in the TSS region: | 144792358 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC012197 |
|---|---|
| Distance: | 9 |
| Num_trans: | 69 |
| All_trans: | BC012197:9 BC013104:-15 BC000077:-18 ENST00000532702.1:-21 ENST00000394920.6:-26 ENST00000529163.5:-27 ENST00000528957.6:-27 NM_001317782:-27 NM_000973:-27 NM_001317771:-27 NM_033301:-27 AK301073:-27 D28421:-27 AK289459:-33 ENST00000531767.1:-57 BC093064:-57 ENST00000525232.5:-58 AK309619:-58 ENST00000527914.5:-60 ENST00000533397.5:200 ENST00000529920.5:210 BC007935:210 BC030151:210 AB590228:219 DQ893309:222 EU176553:222 CU674022:223 ENST00000262584.7:-224 BT007379:224 CR457046:224 ENST00000528296.5:228 ENST00000531975.5:296 LP997127:362 LY480927:362 LY495824:362 LY496511:362 LY497149:362 LY499157:362 LY500367:362 LZ238771:362 MP073629:362 MP080402:362 MS868989:362 MS880472:362 MS884336:362 MS885486:362 MS994519:362 MA822648:362 LY616535:362 MB473037:362 LP951752:362 LQ724883:362 LY480804:362 LY495674:362 LY496301:362 LY496956:362 LY498887:362 LY500359:362 LZ238512:362 MS868839:362 MS880202:362 MS884143:362 MS885478:362 MS994309:362 MA822312:362 LY616276:362 MB472806:362 ENST00000526668.5:394 BC000047:437 |
TATA-Box annotation
| Distance to TSS: | 32 |
|---|---|
| Nearest PromoterID: | NM_000973 |
| Entrez ID: | 6132 |
| Nearest Unigene: | Hs.178551 |
| Nearest Refseq: | NM_000973 |
| Nearest Ensembl: | ENSG00000161016 |
| Gene Name: | ribosomal protein L8 |
| Gene Alias: | L8 |
| Gene Description: | ribosomal protein L8 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
