Difference between revisions of "TSS:Hg 13296.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000615519.4:163 | + | |all_trans=ENST00000615519.4:163 ENST00000613902.4:163 ENST00000616709.4:163 NM_001252273:163 NM_001252270:163 NM_001252269:163 ENST00000370310.5:223 NM_001006605:223 BC070342:229 HQ447552:255 KJ904254:255 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| Line 9: | Line 9: | ||
|entrez_id=388650 | |entrez_id=388650 | ||
|gc_percent=0.736318 | |gc_percent=0.736318 | ||
| − | |gene_alias= | + | |gene_alias=FAM69A |
| − | |gene_description= | + | |gene_description=divergent protein kinase domain 1A |
|gene_id=388650 | |gene_id=388650 | ||
| − | |gene_name= | + | |gene_name=divergent protein kinase domain 1A |
|gene_source=HGNC:32213 | |gene_source=HGNC:32213 | ||
| − | |gene_symbol= | + | |gene_symbol=DIPK1A |
|gene_synonyms=FLJ23493 | |gene_synonyms=FLJ23493 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:32213 | |hgnc_mgi_id=HGNC:32213 | ||
|nearest_ensembl=ENSG00000154511 | |nearest_ensembl=ENSG00000154511 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001252273 |
|nearest_refseq=NM_001006605 | |nearest_refseq=NM_001006605 | ||
|nearest_unigene=Hs.180946 | |nearest_unigene=Hs.180946 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=human | |species=human | ||
|start=92961684 | |start=92961684 | ||
|start_of_center_position=92961708 | |start_of_center_position=92961708 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-36(CCCTTTAAGCTC,+,0.00),18(CCCTTTATGGCG,+,0.00) |
| − | |transcript_name=ENST00000615519.4 | + | |transcript_name=ENST00000615519.4 ENST00000613902.4 ENST00000616709.4 NM_001252273 NM_001252270 NM_001252269 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_13296.1 | |tss_id=hg_13296.1 | ||
Revision as of 04:54, 16 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 92961708 |
|---|---|
| End of the center position in the TSS region: | 92961709 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000615519.4 ENST00000613902.4 ENST00000616709.4 NM_001252273 NM_001252270 NM_001252269 |
|---|---|
| Distance: | 163 |
| Num_trans: | 11 |
| All_trans: | ENST00000615519.4:163 ENST00000613902.4:163 ENST00000616709.4:163 NM_001252273:163 NM_001252270:163 NM_001252269:163 ENST00000370310.5:223 NM_001006605:223 BC070342:229 HQ447552:255 KJ904254:255 |
TATA-Box annotation
| Distance to TSS: | -187 |
|---|---|
| Nearest PromoterID: | NM_001252273 |
| Entrez ID: | 388650 |
| Nearest Unigene: | Hs.180946 |
| Nearest Refseq: | NM_001006605 |
| Nearest Ensembl: | ENSG00000154511 |
| Gene Name: | divergent protein kinase domain 1A |
| Gene Alias: | FAM69A |
| Gene Description: | divergent protein kinase domain 1A |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.736318 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -36(CCCTTTAAGCTC,+,0.00),18(CCCTTTATGGCG,+,0.00) |
