Difference between revisions of "TSS:Hg 100002.1"
From referenceTSS
| Line 7: | Line 7: | ||
|NFIB2= | |NFIB2= | ||
|NFIB3= | |NFIB3= | ||
| − | |all_trans=ENST00000397581.6:5 | + | |all_trans=ENST00000397581.6:5 LF355360:22 MA590937:22 ENST00000397579.6:-25 LF355361:-131 MA590938:-131 ENST00000380953.6:383 NM_001369461:383 NM_001369471:383 NM_001369464:383 NM_001369475:383 NM_001369477:383 NM_001190737:383 NM_001369481:383 NR_161382:-397 ENST00000397575.7:455 NM_005596:478 BX648845:478 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
|distance=5 | |distance=5 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-399 |
|end=14314557 | |end=14314557 | ||
|end_of_center_position=14314541 | |end_of_center_position=14314541 | ||
|entrez_id=4781 | |entrez_id=4781 | ||
|gc_percent=0.442786 | |gc_percent=0.442786 | ||
| − | |gene_alias=CTF | + | |gene_alias=CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 |
|gene_description=nuclear factor I B | |gene_description=nuclear factor I B | ||
|gene_id=4781 | |gene_id=4781 | ||
| − | |gene_name=nuclear factor I | + | |gene_name=nuclear factor I B |
|gene_source=HGNC:7785 | |gene_source=HGNC:7785 | ||
|gene_symbol=NFIB | |gene_symbol=NFIB | ||
| Line 29: | Line 29: | ||
|nearest_refseq=NM_005596 | |nearest_refseq=NM_005596 | ||
|nearest_unigene=Hs.644095 | |nearest_unigene=Hs.644095 | ||
| − | |num_trans= | + | |num_trans=18 |
|species=human | |species=human | ||
|start=14314523 | |start=14314523 | ||
|start_of_center_position=14314540 | |start_of_center_position=14314540 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000397581.6 | + | |transcript_name=ENST00000397581.6 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_100002.1 | |tss_id=hg_100002.1 | ||
Revision as of 17:27, 11 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 14314540 |
|---|---|
| End of the center position in the TSS region: | 14314541 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000397581.6 |
|---|---|
| Distance: | 5 |
| Num_trans: | 18 |
| All_trans: | ENST00000397581.6:5 LF355360:22 MA590937:22 ENST00000397579.6:-25 LF355361:-131 MA590938:-131 ENST00000380953.6:383 NM_001369461:383 NM_001369471:383 NM_001369464:383 NM_001369475:383 NM_001369477:383 NM_001190737:383 NM_001369481:383 NR_161382:-397 ENST00000397575.7:455 NM_005596:478 BX648845:478 |
TATA-Box annotation
| Distance to TSS: | -399 |
|---|---|
| Nearest PromoterID: | NM_001190737 |
| Entrez ID: | 4781 |
| Nearest Unigene: | Hs.644095 |
| Nearest Refseq: | NM_005596 |
| Nearest Ensembl: | ENSG00000147862 |
| Gene Name: | nuclear factor I B |
| Gene Alias: | CTF |
| Gene Description: | nuclear factor I B |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.442786 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
