Difference between revisions of "TSS:Hg 100006.1"
From referenceTSS
| Line 7: | Line 7: | ||
|NFIB2= | |NFIB2= | ||
|NFIB3= | |NFIB3= | ||
| − | |all_trans= | + | |all_trans=ENST00000646622.1:14 ENST00000636432.1:73 ENST00000635877.1:126 ENST00000606230.2:-261 NM_001369472:-310 NM_001369470:-310 NM_001369460:-310 NM_001369478:-310 NM_001369463:-310 NM_001369473:-310 NM_001369466:-310 NR_161383:-310 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| − | |distance= | + | |distance=14 |
| − | |distance_to_tss= | + | |distance_to_tss=312 |
|end=14322077 | |end=14322077 | ||
|end_of_center_position=14322076 | |end_of_center_position=14322076 | ||
|entrez_id=4781 | |entrez_id=4781 | ||
|gc_percent=0.383085 | |gc_percent=0.383085 | ||
| − | |gene_alias=CTF | + | |gene_alias=CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 |
|gene_description=nuclear factor I B | |gene_description=nuclear factor I B | ||
|gene_id=4781 | |gene_id=4781 | ||
| − | |gene_name=nuclear factor I | + | |gene_name=nuclear factor I B |
|gene_source=HGNC:7785 | |gene_source=HGNC:7785 | ||
|gene_symbol=NFIB | |gene_symbol=NFIB | ||
| Line 26: | Line 26: | ||
|hgnc_mgi_id=HGNC:7785 | |hgnc_mgi_id=HGNC:7785 | ||
|nearest_ensembl=ENSG00000147862 | |nearest_ensembl=ENSG00000147862 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001369463 |
|nearest_refseq=NM_005596 | |nearest_refseq=NM_005596 | ||
|nearest_unigene=Hs.644095 | |nearest_unigene=Hs.644095 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=14322073 | |start=14322073 | ||
|start_of_center_position=14322075 | |start_of_center_position=14322075 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000646622.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_100006.1 | |tss_id=hg_100006.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A2R8Y7V8 |
}} | }} | ||
Revision as of 17:27, 11 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 14322075 |
|---|---|
| End of the center position in the TSS region: | 14322076 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000646622.1 |
|---|---|
| Distance: | 14 |
| Num_trans: | 12 |
| All_trans: | ENST00000646622.1:14 ENST00000636432.1:73 ENST00000635877.1:126 ENST00000606230.2:-261 NM_001369472:-310 NM_001369470:-310 NM_001369460:-310 NM_001369478:-310 NM_001369463:-310 NM_001369473:-310 NM_001369466:-310 NR_161383:-310 |
TATA-Box annotation
| Distance to TSS: | 312 |
|---|---|
| Nearest PromoterID: | NM_001369463 |
| Entrez ID: | 4781 |
| Nearest Unigene: | Hs.644095 |
| Nearest Refseq: | NM_005596 |
| Nearest Ensembl: | ENSG00000147862 |
| Gene Name: | nuclear factor I B |
| Gene Alias: | CTF |
| Gene Description: | nuclear factor I B |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.383085 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
