Difference between revisions of "TSS:Hg 243199.1"
From referenceTSS
| Line 4: | Line 4: | ||
|TF2S= | |TF2S= | ||
|TFIIS= | |TFIIS= | ||
| + | |all_trans=ENST00000507285.5:-5 ENST00000582994.1:-5 AK093459:-5 BC042417:29 | ||
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=-5 |
| − | |distance_to_tss= | + | |distance_to_tss=22502 |
|end=53999948 | |end=53999948 | ||
|end_of_center_position=15232439 | |end_of_center_position=15232439 | ||
|entrez_id=6917 | |entrez_id=6917 | ||
|gc_percent=0.308458 | |gc_percent=0.308458 | ||
| − | |gene_alias=GTF2S | + | |gene_alias=GTF2S{{!}}SII{{!}}TCEA{{!}}TF2S{{!}}TFIIS |
|gene_description=transcription elongation factor A1 | |gene_description=transcription elongation factor A1 | ||
| − | |gene_name= | + | |gene_id=158219 |
| + | |gene_name=tetratricopeptide repeat domain 39B | ||
| + | |gene_source=HGNC:23704 | ||
| + | |gene_symbol=TTC39B | ||
| + | |gene_synonyms=FLJ33868 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:23704 | ||
|nearest_ensembl=ENSG00000187735 | |nearest_ensembl=ENSG00000187735 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_109901 |
|nearest_refseq=NM_006756 | |nearest_refseq=NM_006756 | ||
|nearest_unigene=Hs.491745 | |nearest_unigene=Hs.491745 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=53999944 | |start=53999944 | ||
|start_of_center_position=15232438 | |start_of_center_position=15232438 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000507285.5 ENST00000582994.1 AK093459 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_243199.1 | |tss_id=hg_243199.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=Q5VTQ0 | ||
}} | }} | ||
Revision as of 16:33, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 15232438 |
|---|---|
| End of the center position in the TSS region: | 15232439 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000507285.5 ENST00000582994.1 AK093459 |
|---|---|
| Distance: | -5 |
| Num_trans: | 4 |
| All_trans: | ENST00000507285.5:-5 ENST00000582994.1:-5 AK093459:-5 BC042417:29 |
TATA-Box annotation
| Distance to TSS: | 22502 |
|---|---|
| Nearest PromoterID: | NR_109901 |
| Entrez ID: | 6917 |
| Nearest Unigene: | Hs.491745 |
| Nearest Refseq: | NM_006756 |
| Nearest Ensembl: | ENSG00000187735 |
| Gene Name: | tetratricopeptide repeat domain 39B |
| Gene Alias: | GTF2S|SII|TCEA|TF2S|TFIIS |
| Gene Description: | transcription elongation factor A1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.308458 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
