Difference between revisions of "TSS:Hg 231407.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000506891 | + | |all_trans=ENST00000506891.1:-35 BC070139:-35 AK301185:-37 KJ905020:40 AK298581:-41 AK091187:-72 LF206507:-142 MA442084:-142 LF355433:-151 MA591010:-151 AK298998:-158 BC142985:-162 ENST00000512701.6:-186 ENST00000380850.8:-186 ENST00000297615.9:-186 ENST00000505732.5:-186 NM_001168340:-186 NM_001168339:-186 NM_001168341:-186 NM_152574:-186 AK310482:-186 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:23704 | |hgnc_mgi_id=HGNC:23704 | ||
|nearest_ensembl=ENSG00000155158 | |nearest_ensembl=ENSG00000155158 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_152574 |
|nearest_refseq=NM_152574 | |nearest_refseq=NM_152574 | ||
|nearest_unigene=Hs.563630 | |nearest_unigene=Hs.563630 | ||
| − | |num_trans= | + | |num_trans=21 |
|species=human | |species=human | ||
|start=15307164 | |start=15307164 | ||
|start_of_center_position=15307169 | |start_of_center_position=15307169 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000506891 | + | |transcript_name=ENST00000506891.1 BC070139 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_231407.1 | |tss_id=hg_231407.1 | ||
Revision as of 12:00, 17 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 15307169 |
|---|---|
| End of the center position in the TSS region: | 15307170 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000506891.1 BC070139 |
|---|---|
| Distance: | -35 |
| Num_trans: | 21 |
| All_trans: | ENST00000506891.1:-35 BC070139:-35 AK301185:-37 KJ905020:40 AK298581:-41 AK091187:-72 LF206507:-142 MA442084:-142 LF355433:-151 MA591010:-151 AK298998:-158 BC142985:-162 ENST00000512701.6:-186 ENST00000380850.8:-186 ENST00000297615.9:-186 ENST00000505732.5:-186 NM_001168340:-186 NM_001168339:-186 NM_001168341:-186 NM_152574:-186 AK310482:-186 |
TATA-Box annotation
| Distance to TSS: | 191 |
|---|---|
| Nearest PromoterID: | NM_152574 |
| Entrez ID: | 158219 |
| Nearest Unigene: | Hs.563630 |
| Nearest Refseq: | NM_152574 |
| Nearest Ensembl: | ENSG00000155158 |
| Gene Name: | tetratricopeptide repeat domain 39B |
| Gene Alias: | C9orf52 |
| Gene Description: | tetratricopeptide repeat domain 39B |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
