Difference between revisions of "TSS:Hg 100128.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000486514.5:84 | + | |all_trans=ENST00000486514.5:84 LF206511:162 MA442088:162 ENST00000484726.5:167 AK299073:169 ENST00000545497.5:180 CR933649:180 ENST00000380667.6:196 ENST00000380672.9:257 NM_001317939:257 NM_017637:257 NM_001317940:257 AK131398:257 DQ884938:260 DQ884939:260 DQ884940:260 DQ884941:260 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
|distance=84 | |distance=84 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-262 |
|end=16870938 | |end=16870938 | ||
|end_of_center_position=16870933 | |end_of_center_position=16870933 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_017637 | |nearest_refseq=NM_017637 | ||
|nearest_unigene=Hs.656581 | |nearest_unigene=Hs.656581 | ||
| − | |num_trans= | + | |num_trans=17 |
|species=human | |species=human | ||
|start=16870926 | |start=16870926 | ||
|start_of_center_position=16870932 | |start_of_center_position=16870932 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000486514.5 | + | |transcript_name=ENST00000486514.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100128.1 | |tss_id=hg_100128.1 | ||
Revision as of 17:30, 11 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 16870932 |
|---|---|
| End of the center position in the TSS region: | 16870933 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000486514.5 |
|---|---|
| Distance: | 84 |
| Num_trans: | 17 |
| All_trans: | ENST00000486514.5:84 LF206511:162 MA442088:162 ENST00000484726.5:167 AK299073:169 ENST00000545497.5:180 CR933649:180 ENST00000380667.6:196 ENST00000380672.9:257 NM_001317939:257 NM_017637:257 NM_001317940:257 AK131398:257 DQ884938:260 DQ884939:260 DQ884940:260 DQ884941:260 |
TATA-Box annotation
| Distance to TSS: | -262 |
|---|---|
| Nearest PromoterID: | NM_001317940 |
| Entrez ID: | 54796 |
| Nearest Unigene: | Hs.656581 |
| Nearest Refseq: | NM_017637 |
| Nearest Ensembl: | ENSG00000173068 |
| Gene Name: | basonuclin 2 |
| Gene Alias: | BSN2 |
| Gene Description: | basonuclin 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
