Difference between revisions of "TSS:Hg 100252.1"
From referenceTSS
| Line 17: | Line 17: | ||
|P19ARF= | |P19ARF= | ||
|TP16= | |TP16= | ||
| − | |all_trans=ENST00000380151.3:-16 | + | |all_trans=ENST00000380151.3:-16 AF115544:-16 ENST00000304494.10:-46 NM_000077:-46 NM_001195132:-46 NM_058197:-46 ENST00000579122.1:-47 ENST00000498124.1:-55 DQ318021:-55 KC814157:-56 L27211:-56 JQ694043:-56 JQ694044:-56 JQ694045:-56 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| Line 26: | Line 26: | ||
|entrez_id=1029 | |entrez_id=1029 | ||
|gc_percent=0.781095 | |gc_percent=0.781095 | ||
| − | |gene_alias=ARF | + | |gene_alias=ARF|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16 |
|gene_description=cyclin dependent kinase inhibitor 2A | |gene_description=cyclin dependent kinase inhibitor 2A | ||
|gene_id=1029 | |gene_id=1029 | ||
| − | |gene_name=cyclin | + | |gene_name=cyclin dependent kinase inhibitor 2A |
|gene_source=HGNC:1787 | |gene_source=HGNC:1787 | ||
|gene_symbol=CDKN2A | |gene_symbol=CDKN2A | ||
| Line 39: | Line 39: | ||
|nearest_refseq=NM_000077 | |nearest_refseq=NM_000077 | ||
|nearest_unigene=Hs.512599 | |nearest_unigene=Hs.512599 | ||
| − | |num_trans= | + | |num_trans=14 |
|species=human | |species=human | ||
|start=21974797 | |start=21974797 | ||
|start_of_center_position=21974804 | |start_of_center_position=21974804 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000380151.3 | + | |transcript_name=ENST00000380151.3 AF115544 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100252.1 | |tss_id=hg_100252.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=P42771 |
}} | }} | ||
Revision as of 14:20, 14 June 2021
Basic information about the TSS
|
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| Start of the center position in the TSS region: | 21974804 |
|---|---|
| End of the center position in the TSS region: | 21974805 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000380151.3 AF115544 |
|---|---|
| Distance: | -16 |
| Num_trans: | 14 |
| All_trans: | ENST00000380151.3:-16 AF115544:-16 ENST00000304494.10:-46 NM_000077:-46 NM_001195132:-46 NM_058197:-46 ENST00000579122.1:-47 ENST00000498124.1:-55 DQ318021:-55 KC814157:-56 L27211:-56 JQ694043:-56 JQ694044:-56 JQ694045:-56 |
TATA-Box annotation
| Distance to TSS: | 23 |
|---|---|
| Nearest PromoterID: | NM_058197 |
| Entrez ID: | 1029 |
| Nearest Unigene: | Hs.512599 |
| Nearest Refseq: | NM_000077 |
| Nearest Ensembl: | ENSG00000147889 |
| Gene Name: | cyclin dependent kinase inhibitor 2A |
| Gene Alias: | ARF |
| Gene Description: | cyclin dependent kinase inhibitor 2A |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.781095 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
