Difference between revisions of "TSS:Hg 96302.1"
From referenceTSS
| Line 4: | Line 4: | ||
|NCRNA00089= | |NCRNA00089= | ||
|PCAT12= | |PCAT12= | ||
| − | |all_trans= | + | |all_trans=ENST00000652420.1:71 ENST00000584351.5:84 ENST00000583719.5:84 ENST00000580467.5:84 ENST00000585267.5:84 ENST00000580576.6:84 ENST00000428597.6:84 NR_003529:84 NR_120536:84 NR_047542:84 NR_047541:84 NR_047540:84 NR_047539:84 NR_047538:84 NR_047537:84 NR_047536:84 NR_047535:84 NR_047534:84 NR_047533:84 NR_047532:84 NR_047543:84 DQ485454:84 GQ422823:84 GQ495926:84 GQ495925:84 AB548314:84 DQ485453:84 ENST00000455933.7:115 ENST00000645313.2:116 ENST00000651588.1:-146 ENST00000582301.5:195 ENST00000582072.5:195 ENST00000584816.5:195 ENST00000584020.5:195 ENST00000577551.5:195 ENST00000584637.5:195 ENST00000581051.5:195 GQ495924:195 GQ495918:195 GQ495919:195 GQ495920:195 GQ495921:195 GQ495922:195 GQ495923:195 ENST00000421632.2:388 EU741058:388 ENST00000651904.1:397 ENST00000651784.1:407 ENST00000650946.1:426 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| Line 13: | Line 13: | ||
|entrez_id=100048912 | |entrez_id=100048912 | ||
|gc_percent=0.761194 | |gc_percent=0.761194 | ||
| − | |gene_alias=ANRIL | + | |gene_alias=ANRIL{{!}}CDKN2B-AS{{!}}CDKN2BAS{{!}}NCRNA00089{{!}}PCAT12{{!}}p15AS |
|gene_description=CDKN2B antisense RNA 1 | |gene_description=CDKN2B antisense RNA 1 | ||
|gene_id=100048912 | |gene_id=100048912 | ||
| Line 19: | Line 19: | ||
|gene_source=HGNC:34341 | |gene_source=HGNC:34341 | ||
|gene_symbol=CDKN2B-AS1 | |gene_symbol=CDKN2B-AS1 | ||
| − | |gene_synonyms=ANRIL CDKN2B-AS | + | |gene_synonyms=ANRIL CDKN2B-AS NCRNA00089 PCAT12 RP11-145E5.4 p15AS |
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:34341 | |hgnc_mgi_id=HGNC:34341 | ||
|nearest_ensembl=ENSG00000240498 | |nearest_ensembl=ENSG00000240498 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_047537 |
|nearest_refseq=NR_003529 | |nearest_refseq=NR_003529 | ||
|nearest_unigene=Hs.493614 | |nearest_unigene=Hs.493614 | ||
| − | |num_trans= | + | |num_trans=49 |
|p15AS= | |p15AS= | ||
|species=human | |species=human | ||
| Line 32: | Line 32: | ||
|start_of_center_position=21994701 | |start_of_center_position=21994701 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000652420.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_96302.1 | |tss_id=hg_96302.1 | ||
Revision as of 20:51, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 21994701 |
|---|---|
| End of the center position in the TSS region: | 21994702 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000652420.1 |
|---|---|
| Distance: | 71 |
| Num_trans: | 49 |
| All_trans: | ENST00000652420.1:71 ENST00000584351.5:84 ENST00000583719.5:84 ENST00000580467.5:84 ENST00000585267.5:84 ENST00000580576.6:84 ENST00000428597.6:84 NR_003529:84 NR_120536:84 NR_047542:84 NR_047541:84 NR_047540:84 NR_047539:84 NR_047538:84 NR_047537:84 NR_047536:84 NR_047535:84 NR_047534:84 NR_047533:84 NR_047532:84 NR_047543:84 DQ485454:84 GQ422823:84 GQ495926:84 GQ495925:84 AB548314:84 DQ485453:84 ENST00000455933.7:115 ENST00000645313.2:116 ENST00000651588.1:-146 ENST00000582301.5:195 ENST00000582072.5:195 ENST00000584816.5:195 ENST00000584020.5:195 ENST00000577551.5:195 ENST00000584637.5:195 ENST00000581051.5:195 GQ495924:195 GQ495918:195 GQ495919:195 GQ495920:195 GQ495921:195 GQ495922:195 GQ495923:195 ENST00000421632.2:388 EU741058:388 ENST00000651904.1:397 ENST00000651784.1:407 ENST00000650946.1:426 |
TATA-Box annotation
| Distance to TSS: | -90 |
|---|---|
| Nearest PromoterID: | NR_047537 |
| Entrez ID: | 100048912 |
| Nearest Unigene: | Hs.493614 |
| Nearest Refseq: | NR_003529 |
| Nearest Ensembl: | ENSG00000240498 |
| Gene Name: | CDKN2B antisense RNA 1 |
| Gene Alias: | ANRIL|CDKN2B-AS|CDKN2BAS|NCRNA00089|PCAT12|p15AS |
| Gene Description: | CDKN2B antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.125 |
| GC%: | 0.761194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
