Difference between revisions of "TSS:Hg 96303.1"
From referenceTSS
| Line 4: | Line 4: | ||
|NCRNA00089= | |NCRNA00089= | ||
|PCAT12= | |PCAT12= | ||
| − | |all_trans= | + | |all_trans=ENST00000652420.1:0 ENST00000584351.5:0 ENST00000583719.5:0 ENST00000580467.5:0 ENST00000585267.5:0 ENST00000580576.6:0 ENST00000428597.6:0 ENST00000455933.7:0 ENST00000645313.2:0 NR_003529:0 NR_120536:0 NR_047542:0 NR_047541:0 NR_047540:0 NR_047539:0 NR_047538:0 NR_047537:0 NR_047536:0 NR_047535:0 NR_047534:0 NR_047533:0 NR_047532:0 NR_047543:0 DQ485454:0 GQ422823:0 GQ495926:0 GQ495925:0 AB548314:0 DQ485453:0 ENST00000582301.5:67 ENST00000582072.5:67 ENST00000584816.5:67 ENST00000584020.5:67 ENST00000577551.5:67 ENST00000584637.5:67 ENST00000581051.5:67 GQ495924:67 GQ495918:67 GQ495919:67 GQ495920:67 GQ495921:67 GQ495922:67 GQ495923:67 ENST00000651588.1:-227 ENST00000421632.2:260 EU741058:260 ENST00000651904.1:269 ENST00000651784.1:279 ENST00000650946.1:298 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| Line 13: | Line 13: | ||
|entrez_id=100048912 | |entrez_id=100048912 | ||
|gc_percent=0.676617 | |gc_percent=0.676617 | ||
| − | |gene_alias=ANRIL | + | |gene_alias=ANRIL{{!}}CDKN2B-AS{{!}}CDKN2BAS{{!}}NCRNA00089{{!}}PCAT12{{!}}p15AS |
|gene_description=CDKN2B antisense RNA 1 | |gene_description=CDKN2B antisense RNA 1 | ||
|gene_id=100048912 | |gene_id=100048912 | ||
| Line 19: | Line 19: | ||
|gene_source=HGNC:34341 | |gene_source=HGNC:34341 | ||
|gene_symbol=CDKN2B-AS1 | |gene_symbol=CDKN2B-AS1 | ||
| − | |gene_synonyms=ANRIL CDKN2B-AS | + | |gene_synonyms=ANRIL CDKN2B-AS NCRNA00089 PCAT12 RP11-145E5.4 p15AS |
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:34341 | |hgnc_mgi_id=HGNC:34341 | ||
|nearest_ensembl=ENSG00000240498 | |nearest_ensembl=ENSG00000240498 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_047541 |
|nearest_refseq=NR_003529 | |nearest_refseq=NR_003529 | ||
|nearest_unigene=Hs.493614 | |nearest_unigene=Hs.493614 | ||
| − | |num_trans= | + | |num_trans=49 |
|p15AS= | |p15AS= | ||
|species=human | |species=human | ||
| Line 32: | Line 32: | ||
|start_of_center_position=21994805 | |start_of_center_position=21994805 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000652420.1 ENST00000584351.5 ENST00000583719.5 ENST00000580467.5 ENST00000585267.5 ENST00000580576.6 ENST00000428597.6 ENST00000455933.7 ENST00000645313.2 NR_003529 NR_120536 NR_047542 NR_047541 NR_047540 NR_047539 NR_047538 NR_047537 NR_047536 NR_047535 NR_047534 NR_047533 NR_047532 NR_047543 DQ485454 GQ422823 GQ495926 GQ495925 AB548314 DQ485453 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_96303.1 | |tss_id=hg_96303.1 | ||
Revision as of 20:51, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 21994805 |
|---|---|
| End of the center position in the TSS region: | 21994806 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000652420.1 ENST00000584351.5 ENST00000583719.5 ENST00000580467.5 ENST00000585267.5 ENST00000580576.6 ENST00000428597.6 ENST00000455933.7 ENST00000645313.2 NR_003529 NR_120536 NR_047542 NR_047541 NR_047540 NR_047539 NR_047538 NR_047537 NR_047536 NR_047535 NR_047534 NR_047533 NR_047532 NR_047543 DQ485454 GQ422823 GQ495926 GQ495925 AB548314 DQ485453 |
|---|---|
| Distance: | 0 |
| Num_trans: | 49 |
| All_trans: | ENST00000652420.1:0 ENST00000584351.5:0 ENST00000583719.5:0 ENST00000580467.5:0 ENST00000585267.5:0 ENST00000580576.6:0 ENST00000428597.6:0 ENST00000455933.7:0 ENST00000645313.2:0 NR_003529:0 NR_120536:0 NR_047542:0 NR_047541:0 NR_047540:0 NR_047539:0 NR_047538:0 NR_047537:0 NR_047536:0 NR_047535:0 NR_047534:0 NR_047533:0 NR_047532:0 NR_047543:0 DQ485454:0 GQ422823:0 GQ495926:0 GQ495925:0 AB548314:0 DQ485453:0 ENST00000582301.5:67 ENST00000582072.5:67 ENST00000584816.5:67 ENST00000584020.5:67 ENST00000577551.5:67 ENST00000584637.5:67 ENST00000581051.5:67 GQ495924:67 GQ495918:67 GQ495919:67 GQ495920:67 GQ495921:67 GQ495922:67 GQ495923:67 ENST00000651588.1:-227 ENST00000421632.2:260 EU741058:260 ENST00000651904.1:269 ENST00000651784.1:279 ENST00000650946.1:298 |
TATA-Box annotation
| Distance to TSS: | 15 |
|---|---|
| Nearest PromoterID: | NR_047541 |
| Entrez ID: | 100048912 |
| Nearest Unigene: | Hs.493614 |
| Nearest Refseq: | NR_003529 |
| Nearest Ensembl: | ENSG00000240498 |
| Gene Name: | CDKN2B antisense RNA 1 |
| Gene Alias: | ANRIL|CDKN2B-AS|CDKN2BAS|NCRNA00089|PCAT12|p15AS |
| Gene Description: | CDKN2B antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.1 |
| GC%: | 0.676617 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
