Difference between revisions of "TSS:Hg 100272.1"
From referenceTSS
| Line 4: | Line 4: | ||
|P15= | |P15= | ||
|TP15= | |TP15= | ||
| − | |all_trans=NM_004936:0 NM_078487:0 BC014469:18 L36844:20 ENST00000380142. | + | |all_trans=ENST00000276925.7:0 NM_004936:0 NM_078487:0 BC014469:18 L36844:20 ENST00000380142.5:27 AF004819:27 U17075:27 LF355649:-46 MA591226:-46 LF213880:-47 MA449457:-47 LF206515:-55 MA442092:-55 JQ694046:198 JQ694047:198 JQ694048:198 JX391994:322 AM393264:346 AM393391:346 CR536529:346 AM392641:346 AM392962:346 AB462998:346 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| Line 13: | Line 13: | ||
|entrez_id=1030 | |entrez_id=1030 | ||
|gc_percent=0.711443 | |gc_percent=0.711443 | ||
| − | |gene_alias=CDK4I | + | |gene_alias=CDK4I|INK4B|MTS2|P15|TP15|p15INK4b |
|gene_description=cyclin dependent kinase inhibitor 2B | |gene_description=cyclin dependent kinase inhibitor 2B | ||
|gene_id=1030 | |gene_id=1030 | ||
| − | |gene_name=cyclin | + | |gene_name=cyclin dependent kinase inhibitor 2B |
|gene_source=HGNC:1788 | |gene_source=HGNC:1788 | ||
|gene_symbol=CDKN2B | |gene_symbol=CDKN2B | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=HGNC:1788 | |hgnc_mgi_id=HGNC:1788 | ||
|nearest_ensembl=ENSG00000147883 | |nearest_ensembl=ENSG00000147883 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_078487 |
|nearest_refseq=NM_004936 | |nearest_refseq=NM_004936 | ||
|nearest_unigene=Hs.72901 | |nearest_unigene=Hs.72901 | ||
| − | |num_trans= | + | |num_trans=24 |
|p15INK4b= | |p15INK4b= | ||
|species=human | |species=human | ||
| Line 32: | Line 32: | ||
|start_of_center_position=22009311 | |start_of_center_position=22009311 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=NM_004936 NM_078487 | + | |transcript_name=ENST00000276925.7 NM_004936 NM_078487 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100272.1 | |tss_id=hg_100272.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=P42772 | + | |uniprot_id=K7PPU3 P42772 |
}} | }} | ||
Revision as of 14:21, 14 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 22009311 |
|---|---|
| End of the center position in the TSS region: | 22009312 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000276925.7 NM_004936 NM_078487 |
|---|---|
| Distance: | 0 |
| Num_trans: | 24 |
| All_trans: | ENST00000276925.7:0 NM_004936:0 NM_078487:0 BC014469:18 L36844:20 ENST00000380142.5:27 AF004819:27 U17075:27 LF355649:-46 MA591226:-46 LF213880:-47 MA449457:-47 LF206515:-55 MA442092:-55 JQ694046:198 JQ694047:198 JQ694048:198 JX391994:322 AM393264:346 AM393391:346 CR536529:346 AM392641:346 AM392962:346 AB462998:346 |
TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NM_078487 |
| Entrez ID: | 1030 |
| Nearest Unigene: | Hs.72901 |
| Nearest Refseq: | NM_004936 |
| Nearest Ensembl: | ENSG00000147883 |
| Gene Name: | cyclin dependent kinase inhibitor 2B |
| Gene Alias: | CDK4I |
| Gene Description: | cyclin dependent kinase inhibitor 2B |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.711443 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
