Difference between revisions of "TSS:Hg 100306.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|TSG9= | |TSG9= | ||
| − | |all_trans=BC028316:19 BC036931:39 BC017510:-223 BC046919:-289 ENST00000358022. | + | |all_trans=BC028316:19 BC036931:39 BC017510:-223 BC046919:-289 ENST00000358022.5:-430 AY168647:-430 BC110824:-430 NM_001004125:-434 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
| Line 10: | Line 10: | ||
|entrez_id=286319 | |entrez_id=286319 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
| − | |gene_alias=TSG-9 | + | |gene_alias=CCDC89B|TSG-9|TSG9 |
|gene_description=tumor suppressor candidate 1 | |gene_description=tumor suppressor candidate 1 | ||
|gene_id=286319 | |gene_id=286319 | ||
| Line 16: | Line 16: | ||
|gene_source=HGNC:31010 | |gene_source=HGNC:31010 | ||
|gene_symbol=TUSC1 | |gene_symbol=TUSC1 | ||
| − | |gene_synonyms=TSG-9 | + | |gene_synonyms=CCDC89B TSG-9 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:31010 | |hgnc_mgi_id=HGNC:31010 | ||
Revision as of 14:22, 14 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 25677991 |
|---|---|
| End of the center position in the TSS region: | 25677992 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | BC028316 |
|---|---|
| Distance: | 19 |
| Num_trans: | 8 |
| All_trans: | BC028316:19 BC036931:39 BC017510:-223 BC046919:-289 ENST00000358022.5:-430 AY168647:-430 BC110824:-430 NM_001004125:-434 |
TATA-Box annotation
| Distance to TSS: | 867 |
|---|---|
| Nearest PromoterID: | NM_001004125 |
| Entrez ID: | 286319 |
| Nearest Unigene: | Hs.26268 |
| Nearest Refseq: | NM_001004125 |
| Nearest Ensembl: | ENSG00000198680 |
| Gene Name: | tumor suppressor candidate 1 |
| Gene Alias: | CCDC89B |
| Gene Description: | tumor suppressor candidate 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
