Difference between revisions of "TSS:Hg 100308.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|TSG9= | |TSG9= | ||
| − | |all_trans=ENST00000358022. | + | |all_trans=ENST00000358022.5:0 NM_001004125:0 AY168647:0 BC110824:0 BC046919:77 BC017510:143 BC028316:422 BC036931:442 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| Line 10: | Line 10: | ||
|entrez_id=286319 | |entrez_id=286319 | ||
|gc_percent=0.736318 | |gc_percent=0.736318 | ||
| − | |gene_alias=TSG-9 | + | |gene_alias=CCDC89B|TSG-9|TSG9 |
|gene_description=tumor suppressor candidate 1 | |gene_description=tumor suppressor candidate 1 | ||
|gene_id=286319 | |gene_id=286319 | ||
| Line 16: | Line 16: | ||
|gene_source=HGNC:31010 | |gene_source=HGNC:31010 | ||
|gene_symbol=TUSC1 | |gene_symbol=TUSC1 | ||
| − | |gene_synonyms=TSG-9 | + | |gene_synonyms=CCDC89B TSG-9 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:31010 | |hgnc_mgi_id=HGNC:31010 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_001004125 | |nearest_refseq=NM_001004125 | ||
|nearest_unigene=Hs.26268 | |nearest_unigene=Hs.26268 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=25678375 | |start=25678375 | ||
|start_of_center_position=25678420 | |start_of_center_position=25678420 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000358022. | + | |transcript_name=ENST00000358022.5 NM_001004125 AY168647 BC110824 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100308.1 | |tss_id=hg_100308.1 | ||
Revision as of 14:22, 14 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 25678420 |
|---|---|
| End of the center position in the TSS region: | 25678421 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000358022.5 NM_001004125 AY168647 BC110824 |
|---|---|
| Distance: | 0 |
| Num_trans: | 8 |
| All_trans: | ENST00000358022.5:0 NM_001004125:0 AY168647:0 BC110824:0 BC046919:77 BC017510:143 BC028316:422 BC036931:442 |
TATA-Box annotation
| Distance to TSS: | 437 |
|---|---|
| Nearest PromoterID: | NM_001004125 |
| Entrez ID: | 286319 |
| Nearest Unigene: | Hs.26268 |
| Nearest Refseq: | NM_001004125 |
| Nearest Ensembl: | ENSG00000198680 |
| Gene Name: | tumor suppressor candidate 1 |
| Gene Alias: | CCDC89B |
| Gene Description: | tumor suppressor candidate 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.736318 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
